RNA id: TU120625


Basic Information

Item Value
RNA id TU120625
length 1190
RNA type TUCP
GC content 0.53
exon number 5
gene id AMCG00015267
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6368754 ~ 6384620 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCAGATTCAACGCCAAAGATGAACCCAGACCGCCAGCAACTCGCTCCCCGGTTTATTTCTTCctgtattaattgtatgtatcACGACAGCGAATCCTCAGACAACATTCATCCAGGGCGCCCAAATATCACGTCATCGATAGGCGCACACGAATGGCCTCTTTCCGCAATTCttggctccaccaatgggatgtCTCTAATTCTGTAGCACTTTAGCCGGCTCAAGCATGTGGTCTGTCTTTAACGTGTCGCCAGCGTAAGGTGGATGTGTCTGCTGCAGTAGGGCTGCCCAGCTCCCCCGTGGTGGTGGTTCCAGGCAGTGACGTCACCCTCAGTTGCTCTTTCCACTATAGTGAAGCTGATGACCCTGGCAGAGTGGTGCTGACCTGGCAGCGAGGTCATGAGGTTGTGCACAGTTTCTATTACGGCACAGATCAGCTGAAGGAACAAAGCCCCGCCTACAGGGGGCGCACACAGGTGTTCCCAGAGCAGGTGGCCGTGGGTAACGCCTCTCTGAGGCTGAGAGACGTGCAGGGAAGTGACCAGGGCACCTACACCTGTGCTGTGGCCAATGAACAAGGAAGCAGCCAGAGAGACCTGCAGATCCTAGTGGCAGCGGAATACGAAGAGCCTTGTTTAGTGATCAGCATGTCTAAGCATCCTGGCCTCCTCATGCTGGAGTACTGTGCTCAGGGATACCCGCAGGCCACTGTGCTCTGGCTGAACCAATCTGGAGGTGACATCACGGAGCGCAGCCACACCAGCCAATGGGAGAGCAGGGGAGGGTTGCTGGAGCTGTGCAGCCGTCTGACAGTGGAACAACTGGCCAATCAGAGCTACACCTTCCAGCTGAGCAACCCTGTGGTCAATCAAACCGTCAGGAGGATTGTGGCCATAGCCAGCGGAGTTGCTGTATTGGCCAACATCTCTGAAATAGTTTGACATGTGGAACAGATTGACCTGTAGTCCAGTCCATGACTGACAACATTCAACTCCAGAGTGGATCATAAAGCTGTCTGTGCATCTGAAGCAAGATCATATCTGTGtgatctgctgctgctgctgctgctgctgctgctggccgGCCTAATTCAGTGACCCACAGAATGGAGAAGGCAGAGtaatacagaataaaatgaTAATTGCAATGGATTACTATTACTGGGAGTCCAATGTGctttgtctgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120566 lncRNA downstream 15481 6355020 ~ 6362409 (-) True G96696
TU120513 lncRNA downstream 149114 6228514 ~ 6228776 (-) True G96653
TU120510 lncRNA downstream 154261 6157103 ~ 6223629 (-) True G96650
TU120497 lncRNA downstream 256888 6120654 ~ 6121002 (-) True G96643
TU120496 lncRNA downstream 258237 6118621 ~ 6119653 (-) True G96642
TU120631 lncRNA upstream 26027 6410647 ~ 6412709 (-) True AMCG00015271
TU120734 lncRNA upstream 485842 6870462 ~ 6871498 (-) True AMCG00015283
TU120743 lncRNA upstream 506615 6891235 ~ 6892166 (-) True AMCG00015285
TU120746 lncRNA upstream 510460 6895080 ~ 6896427 (-) False AMCG00015285
TU120800 lncRNA upstream 602780 6987400 ~ 7063937 (-) True G96873
AMCG00015261 mRNA downstream 233166 6124100 ~ 6144724 (-) True AMCG00015261
AMCG00015259 mRNA downstream 280872 6084877 ~ 6097018 (-) True AMCG00015259
AMCG00015260 mRNA downstream 294399 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015257 mRNA downstream 305765 6064969 ~ 6072125 (-) True AMCG00015257
AMCG00015256 mRNA downstream 313831 6049524 ~ 6064059 (-) True AMCG00015256
AMCG00015271 mRNA upstream 26035 6410655 ~ 6419481 (-) False AMCG00015271
AMCG00015270 mRNA upstream 45998 6430618 ~ 6440642 (-) True AMCG00015270
AMCG00015272 mRNA upstream 103822 6488442 ~ 6501219 (-) True AMCG00015272
AMCG00015273 mRNA upstream 130746 6515366 ~ 6525807 (-) True AMCG00015273
AMCG00015275 mRNA upstream 205573 6590193 ~ 6591000 (-) True AMCG00015275
TU120487 other downstream 313731 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 620781 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 1304084 5054901 ~ 5073806 (-) False AMCG00015211
TU120088 other downstream 1372378 4985572 ~ 5005512 (-) False AMCG00015211
TU120659 other upstream 314237 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 533146 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1401467 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1746687 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 2025367 8409987 ~ 8411882 (-) True G97455

Expression Profile