RNA id: TU120631


Basic Information

Item Value
RNA id TU120631
length 866
lncRNA type sense_over
GC content 0.42
exon number 3
gene id AMCG00015271
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6410647 ~ 6419481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGACACACATCTGATGTCAAGATTACAAATCTGGTAAACGCCCCTTCTCATGGTTGAATATATAGGAGGAGCGCTGGAGTTTCACTTCACTGAGGCTGTTGAAGATGAACCTGCTCATGACCTTCGGCTTTGCTTGCTCACTGCTTTCTTCAGCGTCTGGACTGCAGTGTTATTCCTGCTCGAATATGCAAACAGACTGCAATCAAAAAGAAACATGTGATGCTTTAGAAGATCGATGTATGAAAAGCTCAAATATTGTTGGTGGTGTGACAATTTTCATGAAGAGATGCACTCAACAGTTAGCATGCACTACAGGCGTGTGGACCTGCTGTGAAGGAAACCTTTGCAATGATGCCAAACGTGCGGGACCAAGCGTCCTCCTTGTGCTGGTGCCTCTTGTCTCCATCCTCCTCCGCTGAGCAACCTTCACCAACccctttactttttcttttaatgtacttctgtatttttaaaataattatgtgtgtgtgttggggggtggggggggagaaatTCATGACATTGCATAGAAATAATATGGTGGTTAATGTGTAAAGTGAGATGGTTTCAGAGACTAACAGTTTCATGTTGTAGACTAAAAGAGGCAGAATAATTTCCAGGCTGtgcttaaaaacatatttaaatttggaGTAATCAAAAGCagtatgttattttgtttctgttaaacaTCTGCTTTGTCTACAAGTTCCTTATATGCAATTTGTTCCAGtttctgtgtataaatgtcTGTCAAAAGCTGGACTAAATTCAGAGTCAGGGAGACACAGTGGAGgacgtctctctgtgtgtgcccTGGCACTTCAGAGGCTTGTGTAATAAACCTGCTGATTATTGACTCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120566 lncRNA downstream 48238 6355020 ~ 6362409 (-) True G96696
TU120513 lncRNA downstream 181871 6228514 ~ 6228776 (-) True G96653
TU120510 lncRNA downstream 187018 6157103 ~ 6223629 (-) True G96650
TU120497 lncRNA downstream 289645 6120654 ~ 6121002 (-) True G96643
TU120496 lncRNA downstream 290994 6118621 ~ 6119653 (-) True G96642
TU120734 lncRNA upstream 457753 6870462 ~ 6871498 (-) True AMCG00015283
TU120743 lncRNA upstream 478526 6891235 ~ 6892166 (-) True AMCG00015285
TU120746 lncRNA upstream 482371 6895080 ~ 6896427 (-) False AMCG00015285
TU120800 lncRNA upstream 574691 6987400 ~ 7063937 (-) True G96873
TU120912 lncRNA upstream 860202 7272911 ~ 7277373 (-) True G96967
AMCG00015267 mRNA downstream 28208 6368754 ~ 6382439 (-) False AMCG00015267
AMCG00015261 mRNA downstream 265923 6124100 ~ 6144724 (-) True AMCG00015261
AMCG00015259 mRNA downstream 313629 6084877 ~ 6097018 (-) True AMCG00015259
AMCG00015260 mRNA downstream 327156 6078223 ~ 6083491 (-) True AMCG00015260
AMCG00015257 mRNA downstream 338522 6064969 ~ 6072125 (-) True AMCG00015257
AMCG00015270 mRNA upstream 17909 6430618 ~ 6440642 (-) True AMCG00015270
AMCG00015272 mRNA upstream 75733 6488442 ~ 6501219 (-) True AMCG00015272
AMCG00015273 mRNA upstream 102657 6515366 ~ 6525807 (-) True AMCG00015273
AMCG00015275 mRNA upstream 177484 6590193 ~ 6591000 (-) True AMCG00015275
AMCG00015274 mRNA upstream 195340 6608049 ~ 6609427 (-) True AMCG00015274
TU120625 other downstream 26027 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 346488 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 653538 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 1336841 5054901 ~ 5073806 (-) False AMCG00015211
TU120090 other downstream 1405135 4985572 ~ 5005512 (-) False AMCG00015211
TU120659 other upstream 286148 6698857 ~ 6700357 (-) True G96766
TU120782 other upstream 505057 6917766 ~ 6921641 (-) False AMCG00015288
TU121101 other upstream 1373378 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1718598 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 1997278 8409987 ~ 8411882 (-) True G97455

Expression Profile