RNA id: AMCG00015276


Basic Information

Item Value
RNA id AMCG00015276
length 2297
RNA type mRNA
GC content 0.41
exon number 8
gene id AMCG00015276
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6715740 ~ 6729138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATTGAAAACTAAACAGAAGAGTGAAGAGAGAGATCAGATCAGAAAGGAGTGTGAAGACAGAAAGAGGGAAGAGCAGCTggatgagggagagggagGTGCATCTGGGCAGAAGCTGCATACAAGCATACGAATAACAGTGGCCATCTGGGTAGCCGTAGACAGCTACAAGGTCTACCCGTTTGCGGAAGTGTCTGGAAAAGATGATATCTTCGCTGCCTCCTGGATTGCCATCTTCACCGGCTTTGCATTCTTCTGTACGGCCATCTACGGCATCTTTGCTGCCATCAGGAGAAGCAGGTCCATGCTGTTGCTGTACCTGGTTTTGATGCTGGTCATCTACATTTTTGAGTGTGCTTCCGCTATCACCGCGGCCACCCACAGAGACTATCTGGTTGGTAACAGCAATCTGTTGAAGAAGCAGATGCTGAAGTATTACACAGACAACAGCGAGCCTGGGAGAAAGCTGACGGCCACCTGGAATAGAGTCATGTTGGAGATGCAGTGCTGCGGGACAGACAGCCCTCTGGACTGGATCGATTACACCTCTACCTTCAGATCTAAGTTCCCCGCTGAGGATTTCCCCTGGCCGCTCAACTGCTGCAAGAGGAAGAACAATTATGAGGTGATCAACATCAACGGCTGCAGGATCGGGAATCCAGACTATGTCTTCGCCAAGGGCTGTTTTGAGTACATTGGGTACATCTACAATCAGTATGCCTGGGCTGTGTGCTGGCTGGGGTTTGCCATCCTCATGTTTGTGCTACCACTCCTGATACTGACTATGGTTTTCTACACACAACTCTGATGAGGGACATCCACGCTTCCGCACTCCTGTAAATAAAGCCGTGGATcaagctgatgtttttttttctccacagtaTATTAAGGACTGTTTGAAGATTTACAAAATGTTCTTCCACTGTTGCCCTccatttttttccatgtttttttttttaaagaaaatactacagttttttattttattttaaaaagcgaTTCTGCTTCCACAGAGTTGTATAGAAGTTCCACAATGTTGGGAAGTACCTCAAAGACACAATTTTTAACTCTTTCCCCCGATCTAAAGTGGGCGTGATTGAAAATGGCACACGCATAATCTTCCTGATTGAGGCCCTCAGGTTTGTGTATTCTTTCACCTTTTACTTAAATAGCTTTGCCAGTATATGCTTTTTCATATTGTGTCATTTGGCAGACATGGCAGTAACTGTATACCAGTGGTTTCCCATTCAAGCGGTTTAGTGGTTCATCTGAAAATGACTTTACGGAGATTCAGTCAGACCATGAATGGATGCCTAAAGAAATGTTCAGTCTCTGTCAGGACAGTGATGCAAGGTCCATTCTTAGCTTTCTGGAGGAGCCGTTGCAAGTCCAGACAGTTGGCCACCATGCAAGTCCTGATGGTCCATTTTCAAAGACTGCAGAGGACAGCTTCTCTCTGTTGTGCCACCCCTCATCATAGAGATGAATTGGATAAATTGAAGGGAAAGGTTTAAGTCCTTCACTTCGTTGCTGTCTGAAATGTACAATGGGAAGTTGCACTGTATTGAACTTGCatgtaattaattgatttgtttacatccctccCCACTGAGGATACGTgtggatatgtgtgtgtgtgtgtatgcatgtttttaattgttgcagtatgcattTTATGCAATGGTAAGAATTTTCAAATTCATAATCTATATCAAGTTTCAGCATTGCTTTTTGACATGAGGAAAACAGCTTTTAGGAAAAAAATGGCCATTTGAAGATGCAGATAGAAAAAATAGTTGTTGCATTCTAAAAGTACAGTTGAACATTTCATACTTTACACTCATTGACACTAACTCTTAATGAATTGATGTGTGAATACAACCGCAACAACAAAGATATGAACACCTTTGTTCATCTTATCGGAGGTCTGCTGTTAATCTCATGTATGATAAGGCTAGGGATAGGGTTACTGGCTATACTGGGATTCATTTATCCATTAAGAATTGGTGTccaatattgttaaaataatctAATATTCCTTACTTAAGCACAAATGTGGGGTTTTGATTACCATTGACGTATCACATTTGGTATACTTTTAGTCATTGTCCTGTTTAAACGCACTTTGATCCAACAGCTGTACAACAATGGCAGTTAGAGCTGTAACTAGTGAAAGCCGTATTGTCAAGAAATGTTTTGTGATTACTGTattgttaaacaaatatatatattttattgatgtcaaataataaaagtattgtattgtacagcGTTAAAGGGCATTCTGTTGAACAT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17347 UPK1; uroplakin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120661 lncRNA upstream 12646 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA upstream 12646 6701612 ~ 6703094 (+) True G96767
TU120620 lncRNA upstream 23941 6690189 ~ 6691799 (+) True AMCG00015277
TU120595 lncRNA upstream 225217 6455832 ~ 6490523 (+) False G96716
TU120593 lncRNA upstream 225217 6488268 ~ 6490523 (+) True G96716
TU120752 lncRNA downstream 188668 6917806 ~ 6921641 (+) True G96837
TU120852 lncRNA downstream 416813 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 487502 7216640 ~ 7225338 (+) True G96936
TU120942 lncRNA downstream 635245 7364383 ~ 7364984 (+) True G96992
TU121030 lncRNA downstream 904243 7633381 ~ 7649307 (+) True G97059
AMCG00015277 mRNA upstream 24481 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015269 mRNA upstream 326109 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015266 mRNA upstream 370822 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015268 mRNA upstream 403108 6310966 ~ 6312632 (+) True AMCG00015268
AMCG00015263 mRNA upstream 406079 6303283 ~ 6309661 (+) True AMCG00015263
AMCG00015280 mRNA downstream 71819 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015281 mRNA downstream 75518 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015284 mRNA downstream 81729 6810867 ~ 6885373 (+) True AMCG00015284
AMCG00015289 mRNA downstream 261965 6991103 ~ 6996754 (+) True AMCG00015289
AMCG00015293 mRNA downstream 268459 6997597 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 1251623 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1281718 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1324017 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1693688 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1835844 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 268495 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 268495 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 686231 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1221672 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1345043 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile