RNA id: AMCG00015277



Basic Information


Item Value
RNA id AMCG00015277
length 1008
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00015277
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6686351 ~ 6691799 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCGGGGCGGGACAGTCAGTGTCCCGTGATAAGCAGCTTTATCTCCAAACTGCCAACTGACAGCTGCCTGCCTCTGAGGTTGCTGGTGTCCAGCTCCCCCGTGGTGGTGGCTCCAGGCAGTGACGTCACCCTCAGTTGCTCTTTCCACTATAGTGAAGCTGATGACCCTGGCAGAGTGGTGCTGATCTGGCAGCGAGGTCATGAGGTTGTGCACAGTTTCTATTACGGCACAGATCAGCTGAAGGAACAAAGCCCCGCCTACAGGGGGCGCACACAGCTGTTCCCAGAGCAGGTGGCCGTGGGTAACGCCTCTCTGAGGCTGAGAGAGGTGCAGGGAAGTGACCAGGGCACCTACACCTGTGCTGTGGCCAATGAACAAGGAAGAAGCCAGAGAGACCTGCAGATCCTAGTGGCAGTTGCCGTTACTGGAGCAACTGGAGCGGGCAAGTCCTCCTTCATCAACGCGGTCAGGGAACTGGGGGAGGACGACGAGGGGGCCGCACCGACCGGGGAGACGGAAACCACCGCGCAGCCCACCAGGTACACACATCCCCGGTACCCACATGTGGCGTTCTGGGACTTACCGGGAATTGGAGGTCAAGTATGTCCTGCAGACGACTACACGAAGAAGATGAGTTTCGACCAGTATGATTTCTTCATCATCATCGGCAGCAAGCGGTTTACGGAGTACGATACTCTGCTCGTCAAAGACATACAGAACAGAGGGAAGAAGTTCTTCTTTGTCCGCTCACAGGTCGACACTGACATCCGCGCTGCAGAGAGAAGGACGAGCTTCAATAGACAACAGACGCTGGACACAATCAGACAGGACTGCGTGAGAAACCTCCAAAGTGAGACTCTGCCAGACCCCCAAGTGTTCCTCATCTCATCCCACCAGTTAGACGAGTTTGACTTTGATCAGTTAATCGACGCTCTTCAGGAAGATCTGTCGGAGCAGAAGGTGTCTGCACCCGGCCGGTCTCCCCGCGTGTGCGCTCTATTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120595 lncRNA upstream 195828 6455832 ~ 6490523 (+) False G96716
TU120593 lncRNA upstream 195828 6488268 ~ 6490523 (+) True G96716
TU120586 lncRNA upstream 255116 6429589 ~ 6431235 (+) True G96710
TU120568 lncRNA upstream 300784 6378771 ~ 6385567 (+) True G96697
TU120531 lncRNA upstream 410750 6275368 ~ 6275601 (+) True G96671
TU120661 lncRNA downstream 10353 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA downstream 10353 6701612 ~ 6703094 (+) True G96767
TU120752 lncRNA downstream 226547 6917806 ~ 6921641 (+) True G96837
TU120852 lncRNA downstream 454692 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 525381 7216640 ~ 7225338 (+) True G96936
AMCG00015269 mRNA upstream 296720 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015266 mRNA upstream 341433 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015268 mRNA upstream 373719 6310966 ~ 6312632 (+) True AMCG00015268
AMCG00015263 mRNA upstream 376690 6303283 ~ 6309661 (+) True AMCG00015263
AMCG00015265 mRNA upstream 389142 6287585 ~ 6297209 (+) True AMCG00015265
AMCG00015276 mRNA downstream 24481 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015280 mRNA downstream 109698 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015281 mRNA downstream 113397 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015284 mRNA downstream 119608 6810867 ~ 6885373 (+) True AMCG00015284
AMCG00015289 mRNA downstream 299844 6991103 ~ 6996754 (+) True AMCG00015289
TU120220 other upstream 1222234 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1252329 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1294628 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1664299 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1806455 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 306374 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 306374 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 724110 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1259551 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1382922 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile