RNA id: AMCG00015280



Basic Information


Item Value
RNA id AMCG00015280
length 1125
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00015280
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6800957 ~ 6802081 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTGAGGCTGGCAAGGCGAGAAAGGGGCTAAGCACTCTAAAAGTGACCATGGGCAAAAGCAAGGCTGATTTCAAAGAGGCAGTGGAGGGTTTGGTGCGCAGCAAAATCCACATTGCGGTGGCTGGTGAGCCAGGGACTGAGAAGCTGGCCTTTATCAACGTCATCAGAGGACTGgaagaagatgaggaagagggACCTAGTTCAAAAGAGGAGCCCACCAAGTACTGCCACCCTAAATTCCCCCGTGTGAAAATCTGGGATCTCCCATGCCTCCCTGCTTCCAACTTCAGCCCTGATGCCTACCTGGAGAAAATCAGACTTGGACGATATGAGGCTGTCCTAGTCACCACCTCGGAGGAATTTGCTTCAGAGTATGTTATGCTTTCTTCCGCCATAGTGGCAGCCAAGACACCAGTCTACTTTGTCTTGCTCGCTTCCCTGGAAGACTCCCCACAGTCGCTGCaggagaagaagagaaagaacaAGGAGCGCTTGAAGTTGGCTGGTTTGGAGGCTCCTCGGGTATTCCTGGTCTCCAGACAGAATTTAGGACGGCTGGAGTTCCTGAGCCTCTTGGACGCCATGGAGAAGGACCTTCCAGAGATGAAGATGAACCTCCTGCTCATCTCCCTTCCGGTGTTTGCTGCCTCCATGCtgcaaaagaagaagaaggccTTCAAGAATTACATCTTGAAGGACGCCTCCTACTCGGCAGGGGTGAACTCTATTCCCCTGCCAGAGGTGGGGGCCAAACTGGACCACAGGCACCTTGAAAAGGTCCTCACCAGGATCCGAGACTCGTTCGACCTAGACAATGCTTCCCTCCAGAGACTGGCCAGACGCATGGACCAGCCTGTTGAGGAGCTCAAATCTGTGCTGGCTTCGGAGATCTCCATGGATATCAACAAGAACCTGGTAATTGGACTGCTGGCCAAGGCTAAAGGGCAAGAGTCCCTGGCTAGTAAGATGTTGGAAGCCAGTCCAGTGAGATACTTGAAGAAATCGAGCCAATCAATGGCCACCACCTACTTCATGCTTCACTCAGCGATGGATGAGTTGGAGGAGGATGCCAAGAGAGTCCTGGAGAAAGCCTCACATGGGAAAGAGAACAGGGCAAgataa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU120661 lncRNA upstream 97863 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA upstream 97863 6701612 ~ 6703094 (+) True G96767
TU120620 lncRNA upstream 109158 6690189 ~ 6691799 (+) True AMCG00015277
TU120595 lncRNA upstream 310434 6455832 ~ 6490523 (+) False G96716
TU120752 lncRNA downstream 115725 6917806 ~ 6921641 (+) True G96837
TU120852 lncRNA downstream 343870 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 414559 7216640 ~ 7225338 (+) True G96936
TU120942 lncRNA downstream 562302 7364383 ~ 7364984 (+) True G96992
TU121030 lncRNA downstream 831300 7633381 ~ 7649307 (+) True G97059
AMCG00015276 mRNA upstream 71819 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015277 mRNA upstream 109698 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015269 mRNA upstream 411326 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015266 mRNA upstream 456039 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015268 mRNA upstream 488325 6310966 ~ 6312632 (+) True AMCG00015268
AMCG00015281 mRNA downstream 2575 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015284 mRNA downstream 8786 6810867 ~ 6885373 (+) True AMCG00015284
AMCG00015289 mRNA downstream 189022 6991103 ~ 6996754 (+) True AMCG00015289
AMCG00015293 mRNA downstream 195516 6997597 ~ 6999583 (+) False AMCG00015293
AMCG00015291 mRNA downstream 215415 7017496 ~ 7025046 (+) True AMCG00015291
TU120220 other upstream 1336840 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1366935 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1409234 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1778905 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1921061 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 195552 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 195552 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 613288 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1148729 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1272100 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile