RNA id: AMCG00015281


Basic Information

Item Value
RNA id AMCG00015281
length 1257
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00015281
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6804656 ~ 6805912 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGCCAAGCTGCCTTCAAAGACCTTGGACAACCGTTTGGAGATCATGGAGAAGCTCTCCCAGCTCTTTTTTAGTGAGGACTTTTGCGATGTCCAGTTGGTCATCAATGGGAAGATCTTCCTAAATGCCCATCGAGTCATTCTGGCCCTGGGCAGCGATGTCTTCAAGAACATGTTCTCCAATGGTGCTTGGCAGGAGAGCAAGCAGAACACCATCCAGCTTACAGAAGATGAGTTTTGCGAGGATCATTTTGAAGACTTCCTGCGCTACTTCTACACAGGAACAATCACCATTGATGCAGATAGCTTCTTCCCCCTTTATGTGCTATCGGACAAGTATGATGTGCCAGAGGTGAAGGAGAGCTGTCAGAATTTTGCCATGGACAATGTGACCCGAGGACCTCTCAACCGGGCCATCATCTGGTGGAAACATGCAGCCTACATGAATTTcaaggagctggaggaggcctgcaGCAAATTTGTGGCCTTAAACATGATGTCCGTGACCAAGTCTCCTGACTGGTTGGGCTTGGAGCCAGACCATCTCTGCTCCCTCTTGGACAGGCCGGACCTGGTGGTGGAGAGTGAGTTTGAGCTGTTCCGGGCCTTGAAGAGGTGGCTGTCAAGACACAAGAGCCACACTGAGAAAATCCTAAAACTTGTCCGCTTTCCATTAATGTCGCCAGAGGACATATATGACCCGAGCTTCCCGGACTCTCTCCCAGCAGAGATGAAGGAGGCTTTCTCATCCAACAGTGTGTTGATCTATCAGGTCAACTCTCTTCCCATCGAGACCATTGGCCTGTTTCATGACGTCCAGTCACCAGCATTCACAATGAGACTCTACACATCCCAGACTTTTGGCTGTTCTCGCACAATGAATGACCCCAATTGCTCATCCGGGGAGTCCGTGGAGTTCTTCACCACCCTATTTAAGGCCATAGTATCATGGAGTGTTACAACCCAGCAAAACCATTACAGGGGGCACTCAACTGGCACTACTCAACTGACATGGACGTGCAGAGTGAAGGAGTGCAACCTGACAGAGAGCAGCCACAGCCATCAGCTGAGTGTGCTACTACACAAGTGGGTCGGTGACAAGTGGCTTGCCTGCCGCTGCAAGACATTCAACATTCCACATGGACAAGACATGGGGATCGGGAACCTGCTCACCGAGATGGAAAGGAAGGAGTActtgcacaaaaacacaatctaTGTCCATTTCATTgggaaaacacaatggaagagACCATAG

Function

GO: NA

KEGG:

id description
K24808 BTBD17; BTB/POZ domain-containing protein 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120661 lncRNA upstream 101562 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA upstream 101562 6701612 ~ 6703094 (+) True G96767
TU120620 lncRNA upstream 112857 6690189 ~ 6691799 (+) True AMCG00015277
TU120595 lncRNA upstream 314133 6455832 ~ 6490523 (+) False G96716
TU120752 lncRNA downstream 111894 6917806 ~ 6921641 (+) True G96837
TU120852 lncRNA downstream 340039 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 410728 7216640 ~ 7225338 (+) True G96936
TU120942 lncRNA downstream 558471 7364383 ~ 7364984 (+) True G96992
TU121030 lncRNA downstream 827469 7633381 ~ 7649307 (+) True G97059
AMCG00015280 mRNA upstream 2575 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015276 mRNA upstream 75518 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015277 mRNA upstream 113397 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015269 mRNA upstream 415025 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015266 mRNA upstream 459738 6343797 ~ 6344918 (+) True AMCG00015266
AMCG00015284 mRNA downstream 4955 6810867 ~ 6885373 (+) True AMCG00015284
AMCG00015289 mRNA downstream 185191 6991103 ~ 6996754 (+) True AMCG00015289
AMCG00015293 mRNA downstream 191685 6997597 ~ 6999583 (+) False AMCG00015293
AMCG00015291 mRNA downstream 211584 7017496 ~ 7025046 (+) True AMCG00015291
AMCG00015292 mRNA downstream 227116 7033028 ~ 7041181 (+) True AMCG00015292
TU120220 other upstream 1340539 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1370634 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1412933 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1782604 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1924760 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 191721 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 191721 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 609457 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1144898 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1268269 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile