RNA id: AMCG00015284


Basic Information

Item Value
RNA id AMCG00015284
length 2028
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00015284
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6810867 ~ 6885373 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAAGGTGGTGTATCTCCTTGCCCTGATGCACTACCGAGTTGTCCTGCCTCTCGAAGTGGTCCAGCCAGACTTCCTGTCTGCACAGGAAGGGGACACTGCTGTGCTCCCCTGCTCCGTTTCCCCTGGCAACATGACAACGGAATGCATGATTCCGCAGTGGTTTTTCGGGCTCAGGACCAACAGGACCGCCAACGTCTACCCTGAAAACACTCTCTCCTCCCATGATTACAAGGGGAGGGTCTTCCTGCACCCCCCTGACAACAATGTCACCCTCTCCCTGGCCATCCAACGGCTCACAGTGGGAGACCATCACACCTTTTACTGTGCCCTGTCCTGTCTGCTCAACCACAACTACTACAGACTCACCGGGAATGGCACTCTACTGTTTGTGCACGAAGTTGCCAGGTCCAGCGAAGCCAGACTGGTTTGGAAAACAGCAGGGACAGCCAGGAGCTCTGGGCAGAGTGTCACAATGAAGAGGAGGGGCACAGTGGTCATTCAGACCCAGTTGCGAGTGTCCAGTTTGCAAGATAGGGAAACCTACACCTGTGTCCTGATGTAcggcacacacagacacattgccCAGGAAACTGTCACCATTGGACCAGTCAAGCTGCCAATGCTGCTGTACACAGCCAGCCTGCTCATCTCATTTGTCACCCTCCTCTCTGTGACGGCTGTGCTGCAGCTGAGGAAGAGGCGCCTTTTCAAAGATGTAATTGCAGAACTCCTTGGCGCTCTGCACAAAGCAAGGATCCAGATCTTCATCAGTCAGCTCATgcattcttttcattttcttgggATGGGCTGGGCGGTCAAACACAAAGCACTTGCGGATACGGAAGTACTCTTTGATGCACTCTCGAGAAGCACAGTCACAGATAGAAGTGCAATGTCTGTGCCAGTGCCAGAGCGCGGGACTGAGAACAATGAGGATGAGAAGATGTCTGCTGACCTGCAGTCACTGGAGATTCAGGAGCAAAGTGATCAGCACACAGCAGGACCGCGGAGTGGCGGTGACGAGCCCCCGAGACAGGCAGCTTCCATATTGGGGAGAAAGGCCCAGAAGCTGCGGGATGGCCATGACGAGCCCCCAAGACAAGCGGCTGGGGCACCGGAGAGAGAAGCCCGGAAGCCCCGGGGTCCAGATGAGTCGGACTGGTGGAACTTTAAGAGGGAGCACATTGCACAATTAAGTGGCTGGGGCGACAAGATGAAGCAGACGCAGCTTGGAGCATGTTTGAGGGAAGATGAGTGGGAGGTGGTGGAACAGGCTGTGAGTGGACAAGCAGTGACATGCACAGAGACAGGACCCAGCATGACTGTGATGTGGATCAGCAAGATGGCAACAGCGAGGAAGTCCGGCAAGAGGGAGGATACACTGAGCCAGAGTGCGCAGCCCAGCTACCACTCCCCGCTGAAGAAGAGGAAGCTCAGCTGGGAGAACACCATCAGGGGCAACCACAACAACCAGGCTCTGATAGTGAAGCCCGTCCGGCAGAGGCCTCCCCTGAGCCGACGGGACCTGCAGAGAGCGAGAACGACTGCAGCCCAGAGCAGCGCAACAACGCCACCAAAACGAAGAGCGGAAGTGCGGCCATCTTGTCGGGGATGTAAACAAGACGGAGCTCTGCTTGAGATAGCGCTGGCATACGTGGCCCAGAAACAGCTCCCCACCCATGTAGAAGACACTCAAGCGGGAGAGCAGCGCCAGGGGCACTCACAGCAACCCGGCTACGATGGCGAGGCCTCCCCCGAGCTGACGggaactgcagagagagagaacgtgTCACAAGTGAGCAAACACATAGTGGCCAGTGTCAAGGTTGTGGGATGGGAGGCGGAACAGTGTGCAGCggcaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagagtaGCCTTTTCCTGTCTGGATTACAAACTCTATACCAGAAGTCAGCAGAGATTCCTGGTGAAGAGGGCTTGGCGAGCGCAGACAGAGAGGACAGATCCCCCGGGACGGTCGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120661 lncRNA upstream 107773 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA upstream 107773 6701612 ~ 6703094 (+) True G96767
TU120620 lncRNA upstream 119068 6690189 ~ 6691799 (+) True AMCG00015277
TU120595 lncRNA upstream 320344 6455832 ~ 6490523 (+) False G96716
TU120752 lncRNA downstream 32433 6917806 ~ 6921641 (+) True G96837
TU120852 lncRNA downstream 260578 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 331267 7216640 ~ 7225338 (+) True G96936
TU120942 lncRNA downstream 479010 7364383 ~ 7364984 (+) True G96992
TU121030 lncRNA downstream 748008 7633381 ~ 7649307 (+) True G97059
AMCG00015281 mRNA upstream 4955 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015280 mRNA upstream 8786 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015276 mRNA upstream 81729 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015277 mRNA upstream 119608 6686351 ~ 6691259 (+) False AMCG00015277
AMCG00015269 mRNA upstream 421236 6385666 ~ 6389631 (+) True AMCG00015269
AMCG00015289 mRNA downstream 105730 6991103 ~ 6996754 (+) True AMCG00015289
AMCG00015293 mRNA downstream 112224 6997597 ~ 6999583 (+) False AMCG00015293
AMCG00015291 mRNA downstream 132123 7017496 ~ 7025046 (+) True AMCG00015291
AMCG00015292 mRNA downstream 147655 7033028 ~ 7041181 (+) True AMCG00015292
AMCG00015290 mRNA downstream 176529 7061902 ~ 7079471 (+) True AMCG00015290
TU120220 other upstream 1346750 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1376845 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1419144 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1788815 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 1930971 4876121 ~ 4879896 (+) True G96264
TU120766 other downstream 112260 6997633 ~ 6999583 (+) False AMCG00015293
TU120767 other downstream 112260 6997633 ~ 7080788 (+) True AMCG00015293
TU120961 other downstream 529996 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 1065437 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1188808 8074181 ~ 8078761 (+) True AMCG00015334

Expression Profile