RNA id: TU120782


Basic Information

Item Value
RNA id TU120782
length 511
RNA type TUCP
GC content 0.51
exon number 2
gene id AMCG00015288
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6917679 ~ 6923714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NTCGTTAATAATCAGCGGGGTCGGGGCGGGAATTGGCGTAGCTGGCGGCATCACGTCAATCTCTTCTGACGTTGGGAGACACATCAAGAACAAGCAATACAAGGAGGAGCTTGAAGCTAAGATACAGAGCATTGAAATAGACTTTAGCAATCTACAGGAGTCCATCAAAACCGTCTGCCAGACACTGTCGCAGTTGCAGGAGGAGGTCAGCGGCATGTCGGCGTTAATGGGGGGAGTGGGCATACTGACCAGCGTTTTTTCCCTCGCCCGGGCAGTTAGTCTGCTTGATGATGTCATCGCTTTGGGAGCCAACGCTGCAGCCAGGGTCACAGCAGTGGTGGGCGGCTTACTTGCTGGCATCGCCCTGATTATGGATATGGTCAACATTATCCGCAAGGCCAAAGATCTGCATGCAGGGTGCAAGACTGAAGCTGCCAAAGAGGTCCGCAACAAAGTCGAGGAGATTCAGTTCAACCTCAATAAGATCGGAATCTTCATTTCCAAGTTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120746 lncRNA downstream 21339 6895080 ~ 6896427 (-) False AMCG00015285
TU120743 lncRNA downstream 25600 6891235 ~ 6892166 (-) True AMCG00015285
TU120734 lncRNA downstream 46268 6870462 ~ 6871498 (-) True AMCG00015283
TU120631 lncRNA downstream 505057 6410647 ~ 6412709 (-) True AMCG00015271
TU120566 lncRNA downstream 555357 6355020 ~ 6362409 (-) True G96696
TU120800 lncRNA upstream 65759 6987400 ~ 7063937 (-) True G96873
TU120912 lncRNA upstream 351270 7272911 ~ 7277373 (-) True G96967
TU120933 lncRNA upstream 414374 7336015 ~ 7337227 (-) True G96984
TU120938 lncRNA upstream 428868 7350509 ~ 7350785 (-) True G96988
TU120947 lncRNA upstream 440744 7362385 ~ 7364999 (-) True G96994
AMCG00015285 mRNA downstream 22602 6891430 ~ 6895164 (-) False AMCG00015285
AMCG00015287 mRNA downstream 32312 6884044 ~ 6885454 (-) True AMCG00015287
AMCG00015283 mRNA downstream 40032 6870743 ~ 6877734 (-) False AMCG00015283
AMCG00015282 mRNA downstream 63205 6835203 ~ 6854561 (-) True AMCG00015282
AMCG00015279 mRNA downstream 152512 6731492 ~ 6765254 (-) True AMCG00015279
AMCG00015286 mRNA upstream 31678 6953319 ~ 6968744 (-) True AMCG00015286
AMCG00015295 mRNA upstream 94475 7016116 ~ 7030193 (-) True AMCG00015295
AMCG00015294 mRNA upstream 116206 7037847 ~ 7042992 (-) True AMCG00015294
AMCG00015296 mRNA upstream 164055 7085696 ~ 7100008 (-) True AMCG00015296
AMCG00015301 mRNA upstream 205664 7127305 ~ 7213377 (-) True AMCG00015301
TU120659 other downstream 217409 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 533146 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 853607 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 1160657 5755654 ~ 5757109 (-) False AMCG00015244
TU120133 other downstream 1843960 5054901 ~ 5073806 (-) False AMCG00015211
TU121101 other upstream 864446 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1209666 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 1488346 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 1619547 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 1658658 8580299 ~ 8581101 (-) False AMCG00015372

Expression Profile