RNA id: AMCG00015291


Basic Information

Item Value
RNA id AMCG00015291
length 551
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00015291
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7017496 ~ 7025046 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTGTATTTATGGTGATGTCATGAAGATTGACACTACCGGTGCATCGgaagaaacagacaaacaggaTAATTTAACTGTGAACGGGGTTAGTGCTTCTTATAAGTTGGCAGAGCAGGACTTGAGCAGACTAAATGATTACAAGGATATCATAATCCATGTGGgcaaaagtaaacaaatggaCCCTGCTGTCATTAGTGCCATCATTTCTCGCCAGTCTCGGGCTGGGGCAGCACTGGAGAATGGCTGGGGAGACTGTGGAAATGCATTTGGACTTATGCAGGTTAATAAGCTCTACTACACACCAGAAGGCGAGTGGAACAGTGAGGAACATGTTGCTCAAGGCACCCAGATCCTGATTGACTTCATCAACAAGATTAAGAGAAAGTTCCCAAACTGGCCTAAGGAGCATTGGTTTAAAGGGGGGATAGCAGCCTACTGTGCTGGAGATGGAAATGTGGAGTCGTATGAAAAGGTGGATGATCACACCCCTGGAAAGGACTTTGCTAACGATGTTGTTGCCAGAGCCCAGTGGTACAAGAAGAATGgattt

Function

GO:

id name namespace
GO:0016998 cell wall macromolecule catabolic process biological_process
GO:0009253 peptidoglycan catabolic process biological_process
GO:0003796 lysozyme activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120752 lncRNA upstream 95855 6917806 ~ 6921641 (+) True G96837
TU120661 lncRNA upstream 314402 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA upstream 314402 6701612 ~ 6703094 (+) True G96767
TU120620 lncRNA upstream 325697 6690189 ~ 6691799 (+) True AMCG00015277
TU120593 lncRNA upstream 526973 6488268 ~ 6490523 (+) True G96716
TU120852 lncRNA downstream 120905 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 191594 7216640 ~ 7225338 (+) True G96936
TU120942 lncRNA downstream 339337 7364383 ~ 7364984 (+) True G96992
TU121030 lncRNA downstream 608335 7633381 ~ 7649307 (+) True G97059
TU121042 lncRNA downstream 629078 7654124 ~ 7654649 (+) True G97071
AMCG00015293 mRNA upstream 17913 6997597 ~ 6999583 (+) False AMCG00015293
AMCG00015289 mRNA upstream 20742 6991103 ~ 6996754 (+) True AMCG00015289
AMCG00015284 mRNA upstream 132123 6810867 ~ 6885373 (+) True AMCG00015284
AMCG00015281 mRNA upstream 211584 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015280 mRNA upstream 215415 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015292 mRNA downstream 7982 7033028 ~ 7041181 (+) True AMCG00015292
AMCG00015290 mRNA downstream 36856 7061902 ~ 7079471 (+) True AMCG00015290
AMCG00015298 mRNA downstream 150289 7175335 ~ 7177830 (+) True AMCG00015298
AMCG00015297 mRNA downstream 234496 7259542 ~ 7273255 (+) True AMCG00015297
AMCG00015302 mRNA downstream 358181 7383227 ~ 7386810 (+) True AMCG00015302
TU120766 other upstream 17913 6997633 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 1553379 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1583474 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1625773 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1995444 5021366 ~ 5022052 (+) True G96317
TU120961 other downstream 390323 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 925764 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1049135 8074181 ~ 8078761 (+) True AMCG00015334
TU121298 other downstream 1099562 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 1208378 8233424 ~ 8294330 (+) True G97343

Expression Profile