RNA id: AMCG00015293


Basic Information

Item Value
RNA id AMCG00015293
length 922
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00015293
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 6997597 ~ 7080788 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGTACACGCCTGTACAGTACACGCATGCGCTGAACGTGTTTTCCATACTGCTCACTGCAAGAAAAAAACGTCGGTGAGCtctattcttcttattattttttctacatagaaatataattaaatacagacataaatagaaaatgaataaaaccatCAAAGACCACATCATGGACATACTAGACGATCTAGATGATAGCGGTCTCAAGAGGTTTAAGAACAAACTGTCCGACCGAGGAGGGGAGCCTAAGATACCGAAAGGTCGCCTGGAGAAAGCCGACAGCATCGATATAGCCAACCTGCTGGTGAGTTACTTCACCGAGAGCAAAGCCGGCGCGGTCACCATCGAGGTCCTGCAGGCCATCAACCTGAACGCAGAAGCGGACCAACTGAGAGCCCTTACCTCTTAAGTGAAGAGAAAGCGAACCCACCGTACCCGTAAAAAGGTGCATCTTCACCCGCACACTCACCAGGCAGCTGGACCTGCAGCCCCTCATCGCTGTGTGATTGTGGTTTCTATTTTGGACCACGTGGTCGACTTCCTCTGGGACTTCGCCACGAATAGAGTTACGAAAACAAAAGACATGCTATTGAAATTGTCCAAGCTCACTGTGTTGCATAAACTTTTTTTGCTTACATTGTTgcagtttaattgaaaacatgtcTGTGTGATTGTGCGTTTATGTAGAGGGGGGTTGTTTGaatgtttcacattaaaaacaattgtattttaagtCTGCTTGTTGTAGTGTTTTTCAGGCTTAGGTTACATAAAATGGCGAAAACCAGTGACATATCCTGTTACACTCTTAGAACGAATGTCTTAAACTTAATGCATTATGTTTGTTCaaggaaaacacaattaaaattcacCAAAGAACAATACAATGCCCTTTTAACACGTCTGTGTGAGACAAATAAAC

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0032090 Pyrin domain binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120752 lncRNA upstream 75956 6917806 ~ 6921641 (+) True G96837
TU120661 lncRNA upstream 294503 6701612 ~ 6703094 (+) False G96767
TU120662 lncRNA upstream 294503 6701612 ~ 6703094 (+) True G96767
TU120620 lncRNA upstream 305798 6690189 ~ 6691799 (+) True AMCG00015277
TU120593 lncRNA upstream 507074 6488268 ~ 6490523 (+) True G96716
TU120852 lncRNA downstream 146368 7145951 ~ 7146204 (+) True G96915
TU120877 lncRNA downstream 217057 7216640 ~ 7225338 (+) True G96936
TU120942 lncRNA downstream 364800 7364383 ~ 7364984 (+) True G96992
TU121030 lncRNA downstream 633798 7633381 ~ 7649307 (+) True G97059
TU121042 lncRNA downstream 654541 7654124 ~ 7654649 (+) True G97071
AMCG00015289 mRNA upstream 843 6991103 ~ 6996754 (+) True AMCG00015289
AMCG00015284 mRNA upstream 112224 6810867 ~ 6885373 (+) True AMCG00015284
AMCG00015281 mRNA upstream 191685 6804656 ~ 6805912 (+) True AMCG00015281
AMCG00015280 mRNA upstream 195516 6800957 ~ 6802081 (+) True AMCG00015280
AMCG00015276 mRNA upstream 268459 6715740 ~ 6729138 (+) True AMCG00015276
AMCG00015291 mRNA downstream 17913 7017496 ~ 7025046 (+) True AMCG00015291
AMCG00015292 mRNA downstream 33445 7033028 ~ 7041181 (+) True AMCG00015292
AMCG00015290 mRNA downstream 62319 7061902 ~ 7079471 (+) True AMCG00015290
AMCG00015298 mRNA downstream 175752 7175335 ~ 7177830 (+) True AMCG00015298
AMCG00015297 mRNA downstream 259959 7259542 ~ 7273255 (+) True AMCG00015297
TU120220 other upstream 1533480 5426879 ~ 5464117 (+) False G96420
TU120218 other upstream 1563575 5432605 ~ 5434022 (+) True G96420
TU120210 other upstream 1605874 5388937 ~ 5391723 (+) True G96415
TU120099 other upstream 1975545 5021366 ~ 5022052 (+) True G96317
TU120035 other upstream 2117701 4876121 ~ 4879896 (+) True G96264
TU120961 other downstream 415786 7415369 ~ 7415762 (+) True G97006
TU121162 other downstream 951227 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 1074598 8074181 ~ 8078761 (+) True AMCG00015334
TU121298 other downstream 1125025 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 1233841 8233424 ~ 8294330 (+) True G97343

Expression Profile