RNA id: AMCG00015294


Basic Information

Item Value
RNA id AMCG00015294
length 1533
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00015294
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7037847 ~ 7042992 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGAAGGAGGCAGAATATCAAATGGACGCTAGAGAGACTTCGGGTTTGGTCTACAACGACGTTTGAAAAGGACACATTCACTGTGAAACGGGTTTTAAGTCCAAACCTTTAATCAGTGTTTGCAGTTTGCAGCCAGCAGTtgatacttttttcttcttcttcgaGTATCTGGGGCTTGTTTATTTCTCCCTAAGCTAACTGTTGCTCAAGATGTGTTTCCCGGGGGTGCCTGTGCTTCGTGCTTTGACAGCCCTGCTCTTCGtaaGTCAGTGCTGGGGTGGCTGTGTGGAGGTGGACTCTATGACTGAGGCGGTGGTGGGACAGGGTTTTAAACTGGGCTGCATCTCTTGTaagaggaggggggaggtgCCTGCTGAGGCCCATGTGCAATGGTCCTACCAAGCAAAGGGGGAGACCGAATTCACCGAACTGTACCACTACGAGAACATGATGCCTTACAACATGCACGATCAGTTCAAAGACCGTCTGGCCTGGAATGGGAGCAAGAATACGGTGGACCTCCAAGACGGCTCCCTGTACATCCTCAATGTCAGCCTGAACGACAGCGGCGTCTACCTCTGTCAGTTCTATCGCACCCTGCTCATGTCCAACCACAAATACAACGTCAACGCCAGCAAGCTGATCGAGCTCACCGTGGTGGAAGATGCTAACCGGGAGCTGACATCCATCATCTCGGAGATCATGATGTATGTGACCATCGTGGGGCTGCAGCTCTGGATGATTGTCATCCTAATCTACTGTTACAAGAAAATTACATCCGCCGGGGAAGAAGCCACGAAAGACGGCGAACCCTTAGACGGCAAAGAAGACAACTGCACTGCTCTGCAGGTGGAGGAGTAGAAGGACTGGCTCTCTAGGAGGAGCATTTCCGTAATGGCCCCCTACAATGAAAGAGGTGGTAGGAGGTGGGGGATCTCTGATCACACTGGCTGACTGTCAACCTTGAAAGAAGAAATCTAAgtatcattgtttttttctctctcagaaaAGAATTCCAGAACACGTATGCTGCGATCCTGTGTTATATTTTGCAGTGTCTGTTTGgcaattatttaaagatacGTGCCTTTTCCCAATGGCCAAATGCTTTTCAAACCTTGCCAAGTGTGCACTACCTGTATGCTTGTATATGCAAACAACTTTCCTTTAaatttttctttttcgtttCCCTGTTATGGAACTCTCCTAGAATAAAATCTTGAAAATGTGTCACAAAACTGCCAGGCAGGTAGCTGGGGCTTTGTAAGTGATTGAGTTGGAGCCGCTCTAGGGCACTGATTTGAGTACTGCTTTTAAGAGGAATTTCTCTGAACTCTcaattgaaaaatgtttaactCTTAAATCACTCAATTAGCATTTGCTGCATACCGTCTATGGCAGTGCTTCCCAACCTTAGCCCTGGGGGTCTAATGTCCTATCAATCTTTGCCTTAAGAAGTAGAATCTGATTTAATTCAAGGGGAATGCACTGATTTGTACAAACTAAACTAATAAAGTGTGTTTGAAAAGAAA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120746 lncRNA downstream 141420 6895080 ~ 6896427 (-) False AMCG00015285
TU120743 lncRNA downstream 145681 6891235 ~ 6892166 (-) True AMCG00015285
TU120734 lncRNA downstream 166349 6870462 ~ 6871498 (-) True AMCG00015283
TU120631 lncRNA downstream 625138 6410647 ~ 6412709 (-) True AMCG00015271
TU120566 lncRNA downstream 675438 6355020 ~ 6362409 (-) True G96696
TU120912 lncRNA upstream 229919 7272911 ~ 7277373 (-) True G96967
TU120933 lncRNA upstream 293023 7336015 ~ 7337227 (-) True G96984
TU120938 lncRNA upstream 307517 7350509 ~ 7350785 (-) True G96988
TU120947 lncRNA upstream 319393 7362385 ~ 7364999 (-) True G96994
TU120944 lncRNA upstream 319498 7362490 ~ 7364999 (-) False G96994
AMCG00015295 mRNA downstream 7654 7016116 ~ 7030193 (-) True AMCG00015295
AMCG00015286 mRNA downstream 69103 6953319 ~ 6968744 (-) True AMCG00015286
AMCG00015288 mRNA downstream 114133 6917679 ~ 6923714 (-) True AMCG00015288
AMCG00015285 mRNA downstream 142683 6891430 ~ 6895164 (-) False AMCG00015285
AMCG00015287 mRNA downstream 152393 6884044 ~ 6885454 (-) True AMCG00015287
AMCG00015296 mRNA upstream 42704 7085696 ~ 7100008 (-) True AMCG00015296
AMCG00015301 mRNA upstream 84313 7127305 ~ 7213377 (-) True AMCG00015301
AMCG00015299 mRNA upstream 174284 7217276 ~ 7223945 (-) True AMCG00015299
AMCG00015300 mRNA upstream 188450 7231442 ~ 7231936 (-) True AMCG00015300
AMCG00015303 mRNA upstream 251870 7294862 ~ 7297585 (-) True AMCG00015303
TU120782 other downstream 116206 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 337490 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 653227 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 973688 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 1280738 5755654 ~ 5757109 (-) False AMCG00015244
TU121101 other upstream 743095 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1088315 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 1366995 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 1498196 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 1537307 8580299 ~ 8581101 (-) False AMCG00015372

Expression Profile