RNA id: AMCG00015296


Basic Information

Item Value
RNA id AMCG00015296
length 2067
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00015296
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7085696 ~ 7100008 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGCGGTGGTATTTGCTGGTGGTCTGGAGACATGGTTGTGTGGTTCCCTGGCCCTGTGGCAGGCTGTGATCACTGCCCACTGTGAGCCGGGCCTCTGTGCTAAGCTGGGGGAAGACGGtACGGCCAGTAACTCTCCTCGCAGCACCCCGAGCAGCTCTCCAGCAGTTCGACGGAGGCTCCTGGCAGCTGGTCTGTCTGCGCGCTCCTGCGAGGGAGACGGAGTGGGGGTGGCGGCCCAGGACCGGGGCTCTGACCCCAACCTGGCACCCTACCCCCAGGCAACCCCCAACTACCCCCTTCCCACATACAAGCAACGGAATGAGGACTTCAGGAAGATCTTCAAGAAGCTGCCCGACACAGAGCGTCTGATTGTGGATTACTCCTGCGCACTCCAGAAAGACATCCTCCTGCAGGGCAGACTGTACCTCTCGGAGAACTGGATCTGTTTCTATAGCAACATATTCCGCTGGGAGACTACAATCACTATTCAGCTGAAAGATGTGACCTCTCTGACTAAAGAGAAGACCGCCAAACTCATCCCCAATGCCATTCAGATCAGCACTGAACAAGACAAGCACTTTTTCACTTCGTTCGGAGCGCGAGACCGAAGCTACATGATGGTCTTCAGACTGTGGCAGAACGCGCTCATGGAGAAGcctctaTCCCCAAAGGAACTATGGCACATCGTACACCAGTGTTATGGCACAGAGCTGGGGCTGACCAGTGAGGACGACGACTACGTCTCTCCCACGGAGCACATCAATGGCCTCATCCCGGGAGAGGACGCTGTGTCGGAGCTGCTGGAGCTCAGCGCTGAGCCCCCCTCCAGGAACAGTGTGGACTTAAAGCTGGACCCCAGCCCCCTGAGCGACCGGCAGCCCAGCAACCGCTCACACACCTCTGTGGAGAGCAGTGATGGAGGGGCGCCCTCGttcctGGATGACATGGAGCCTCACTCTGACAGTCAGCTGGAGGGCTCCTCCAATCACACGCTGACGCCAGTCTCTGAGAGGGCCAAGGGGGGCATCGGCCTGGGAAACCTCTCCTCGTTGGACATCGCCAACGAcgacgacctgcccactgaccTCAGCAACTCCTCCGACACCCAGGAAGAGAGTGAAGTGGAGGCCTTTTGCGCCGACCTCAATGGCCGTCTGCACATCAACGCGGTGTACAGGATCGGCGTGGACAGGATGTACGAGCTTCTCTTCACCGACACCCACTTCATCCAGGACCTGTTTGAACAGCGCAGATTCACAGATCTGACCGTGAATGAGTGGAATACGGAGAACAGCGGGAACTCATCCAGAGTGCTGTCCTACACGATCGCCATTAACAACCCCCTGGGACCAAAGACTGCCCCTGTGGTGGAGACGCAGACTCTGTACAAGAGCAGTCAGAAGAGCGAGTGCTATGTGGTGGACTCCGAGGTCCTCACCCAGGGCATCCCCTACCAGGACTATTTCTACACCGTGCACCGCTACTACATCCGCTATCGAAAGCAGCCCTGGAGTTTAGTGAAGGCACTAATAGAGAAAAACACCTGGAGTGGCATTGAAGAGTACTACAGGCACCTAGAACTGGAGGTGTCTAAACTGGAGACGCTGCTGCAGACAGACGTGGTGGTCGGGGGGGACACTCCCAGCAAAGGTCCAGCGCTGCGCCGCCGGAAACGCAACTCTGGACGGCGGGTGGGGCACCACGAGGGCTTGGGGGTGGCTGGCACCCTCTCTGAAAAGGACCGGCCCTCCCGGGGTGGTACAGgTGCTCAGTTTCTGAAGTTGGGAGAGCGGTCACGAGGAGGAAACATCTCCACAATTCTGCTCATTGTCAGCTTCATTAGTAAGCTCCCTCAGACAGCCTCAGAGTGGGCTCAGATCCTGGAGCTGCAGAAGCAGTTCCACCAGGCCGAGGTGCACAAGTGGCAGCAGATCCTGAAGGCCTCAGTGGGACTCCTGGATGAGATGAAGCTGTCCCTGGAGAAGCTGCACAGAGGGATCGTCACCCCCAAGGGAGCGCAGGACCTCGCCGCCAGCACAGAGGACACCGCCACTCAGCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120800 lncRNA downstream 21759 6987400 ~ 7063937 (-) True G96873
TU120746 lncRNA downstream 189269 6895080 ~ 6896427 (-) False AMCG00015285
TU120743 lncRNA downstream 193530 6891235 ~ 6892166 (-) True AMCG00015285
TU120734 lncRNA downstream 214198 6870462 ~ 6871498 (-) True AMCG00015283
TU120631 lncRNA downstream 672987 6410647 ~ 6412709 (-) True AMCG00015271
TU120912 lncRNA upstream 172903 7272911 ~ 7277373 (-) True G96967
TU120933 lncRNA upstream 236007 7336015 ~ 7337227 (-) True G96984
TU120938 lncRNA upstream 250501 7350509 ~ 7350785 (-) True G96988
TU120947 lncRNA upstream 262377 7362385 ~ 7364999 (-) True G96994
TU120944 lncRNA upstream 262482 7362490 ~ 7364999 (-) False G96994
AMCG00015294 mRNA downstream 42704 7037847 ~ 7042992 (-) True AMCG00015294
AMCG00015295 mRNA downstream 55503 7016116 ~ 7030193 (-) True AMCG00015295
AMCG00015286 mRNA downstream 116952 6953319 ~ 6968744 (-) True AMCG00015286
AMCG00015288 mRNA downstream 161982 6917679 ~ 6923714 (-) True AMCG00015288
AMCG00015285 mRNA downstream 190532 6891430 ~ 6895164 (-) False AMCG00015285
AMCG00015301 mRNA upstream 27297 7127305 ~ 7213377 (-) True AMCG00015301
AMCG00015299 mRNA upstream 117268 7217276 ~ 7223945 (-) True AMCG00015299
AMCG00015300 mRNA upstream 131434 7231442 ~ 7231936 (-) True AMCG00015300
AMCG00015303 mRNA upstream 194854 7294862 ~ 7297585 (-) True AMCG00015303
AMCG00015304 mRNA upstream 286851 7386859 ~ 7389560 (-) True AMCG00015304
TU120782 other downstream 164055 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 385339 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 701076 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 1021537 6049477 ~ 6064159 (-) False AMCG00015256
TU120336 other downstream 1328587 5755654 ~ 5757109 (-) False AMCG00015244
TU121101 other upstream 686079 7786087 ~ 7786442 (-) True G97125
TU121448 other upstream 1031299 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 1309979 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 1441180 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 1480291 8580299 ~ 8581101 (-) False AMCG00015372

Expression Profile