Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00015299 |
| length | 1319 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 11 |
| gene id | AMCG00015299 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030132.1 |
| NCBI id | CM030132.1 |
| chromosome length | 32980562 |
| location | 7217276 ~ 7223945 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0000502 | proteasome complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| K03063 | PSMC4, RPT3; 26S proteasome regulatory subunit T3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU120800 | lncRNA | downstream | 153339 | 6987400 ~ 7063937 (-) | True | G96873 |
| TU120746 | lncRNA | downstream | 320849 | 6895080 ~ 6896427 (-) | False | AMCG00015285 |
| TU120743 | lncRNA | downstream | 325110 | 6891235 ~ 6892166 (-) | True | AMCG00015285 |
| TU120734 | lncRNA | downstream | 345778 | 6870462 ~ 6871498 (-) | True | AMCG00015283 |
| TU120631 | lncRNA | downstream | 804567 | 6410647 ~ 6412709 (-) | True | AMCG00015271 |
| TU120912 | lncRNA | upstream | 48966 | 7272911 ~ 7277373 (-) | True | G96967 |
| TU120933 | lncRNA | upstream | 112070 | 7336015 ~ 7337227 (-) | True | G96984 |
| TU120938 | lncRNA | upstream | 126564 | 7350509 ~ 7350785 (-) | True | G96988 |
| TU120947 | lncRNA | upstream | 138440 | 7362385 ~ 7364999 (-) | True | G96994 |
| TU120944 | lncRNA | upstream | 138545 | 7362490 ~ 7364999 (-) | False | G96994 |
| AMCG00015301 | mRNA | downstream | 3899 | 7127305 ~ 7213377 (-) | True | AMCG00015301 |
| AMCG00015296 | mRNA | downstream | 117268 | 7085696 ~ 7100008 (-) | True | AMCG00015296 |
| AMCG00015294 | mRNA | downstream | 174284 | 7037847 ~ 7042992 (-) | True | AMCG00015294 |
| AMCG00015295 | mRNA | downstream | 187083 | 7016116 ~ 7030193 (-) | True | AMCG00015295 |
| AMCG00015286 | mRNA | downstream | 248532 | 6953319 ~ 6968744 (-) | True | AMCG00015286 |
| AMCG00015300 | mRNA | upstream | 7497 | 7231442 ~ 7231936 (-) | True | AMCG00015300 |
| AMCG00015303 | mRNA | upstream | 70917 | 7294862 ~ 7297585 (-) | True | AMCG00015303 |
| AMCG00015304 | mRNA | upstream | 162914 | 7386859 ~ 7389560 (-) | True | AMCG00015304 |
| AMCG00015305 | mRNA | upstream | 166944 | 7390889 ~ 7448294 (-) | True | AMCG00015305 |
| AMCG00015313 | mRNA | upstream | 483965 | 7707910 ~ 7710268 (-) | True | AMCG00015313 |
| TU120782 | other | downstream | 295635 | 6917766 ~ 6921641 (-) | False | AMCG00015288 |
| TU120659 | other | downstream | 516919 | 6698857 ~ 6700357 (-) | True | G96766 |
| TU120625 | other | downstream | 832656 | 6377890 ~ 6384620 (-) | True | AMCG00015267 |
| TU120487 | other | downstream | 1153117 | 6049477 ~ 6064159 (-) | False | AMCG00015256 |
| TU120336 | other | downstream | 1460167 | 5755654 ~ 5757109 (-) | False | AMCG00015244 |
| TU121101 | other | upstream | 562142 | 7786087 ~ 7786442 (-) | True | G97125 |
| TU121448 | other | upstream | 907362 | 8131307 ~ 8134115 (-) | False | G97411 |
| TU121510 | other | upstream | 1186042 | 8409987 ~ 8411882 (-) | True | G97455 |
| TU121587 | other | upstream | 1317243 | 8541188 ~ 8543180 (-) | False | AMCG00015374 |
| TU121599 | other | upstream | 1356354 | 8580299 ~ 8581101 (-) | False | AMCG00015372 |
