RNA id: AMCG00015310


Basic Information

Item Value
RNA id AMCG00015310
length 3489
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00015310
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7735343 ~ 7750584 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAATGGGAACCCGTTGAAATTCAACCACGTTTCTTACACTGACAGTGGCAGCTACTACTGCAGTGTAAAGAATGACATTGGAGAAAGCAACTCCACAGTCACCACTTTCAACGTGAAGTATGCTCCCAAATCCATCAAAATCGTGCACAATCACAGTAATCCATATACGGATGGCAACGTATGGATGATGTGCAGCTGTGAGAGCTATCCCCCTGTGATAGAGTACTCGTGGTACACCATATCCCAACAATTTGAGGAGACATACATTTCAAGCAATCAGAATCTGACTGTGCACTCAGCGGATCCATTCATGTACTATTGTTCAGCCCGCAATGAGATCTCAAGGGAGGAGTCCATTCGGATACGATTACCCATGAAACGTGGTCTTTCTCAGATGAACATCATTTTGCTTGTGATTTTGTCTCTGATCCTTATCATTCTTTTGACCTTCTGCCTCATCCACAGAAGACGAAAGAGAAAAGCAACACAAGGAGGTGTCAGAGACAAGGACATGTGCCTGAAATTACTAGGCTATGTGGGTGCCCGAAACAATACCCGAGAGAATCTCGTGCTTGAGGGGATGAGTGAATCTCAGAGGAGCCGTGAAGACCTGACCGAAGGAATCCACAACCCTCAGTTCGCCCTCCACAGCCATGTCCCTAACTTACCTCGACCAGGACGTTGCTCTGAAGTGACTACCATCTACAGCACAGTGAAAACAGCTGTCGCACAGAAGGGCCTGGATgagggagggaagagggagTGTCTGAACGGAGATGCTGGTCAGACTGGGTGTGAGGAGACCCTGAACTACGCTTATCTCGATTTCCATGGAAAACATCAACCTAACGGgaAAGAAGACAACTTCAATTTGAGGGAAGGCGATGGTGCTATATATGCTAAAGTAAACCGGACTAGTCAGAAAAAACAGGGGAAAGGGGATTATGAAAACATGCAAGGTGGTAAGGTTGCCAAGAGGAAAGAGTCAGAGGAGGAAGATGAGATTGAAGGGATCCACTACTCCTCCATTGTCCTGCCCAAGACTCTTCCCAGCAGCAGTCTGGAGTGGGAATCAGAGCCTGACTCTGATGAGGAGGACTACACCACACAATACTCCAAAGTCAAGACCTAAGCTTGGCCCAAGGTTTGGACATGCCAGGGTCGCTCTgctcttttttatatatatttttattttacagccatAGAGGAtctctggttttcatttcaccctCTGTAATTATCTATCTGTTCCTCTCGCTGAACATGTGGAACTCAATTCCCAAGTCTAAAAGGGGGATATTGGGAGTAAAGTGCTTTGACATACCATGCTGGAGTGTCCCCAGGGTGAGCGATGGGCGTAGGCCATCTTGGGCAGGATTGTGCTGTCGAGTATAATCAACCCTGACGATCACTCTGTGAATTTACAATGAAACCCTGATCATTCAGGGTAACTAAAAAAGGACTGGGGAATGTAGAATAAATCTTTGAGGCCGCTAATCTAAGTAAATTAGAGTTTTATCAACTTGTACATTGAACATAACATAAGTATGCTGTTAAAATCTTTATGGAAATGGCTATGATGGCTAAGATTTTAAAACAGAGTTAAATAATTTGATATTGTTATATAGTAATGAAGTAGTGTGCCAAAAATAAGCCTTCTCAGAGTCTGTACCTTTGTTGTCCCATTCCTTGTGACATTGTAGTACCAACAATGGTCCCAGAGgcccctgtgtctgctggtcCATTCCAGCCCCATTATCCTCTACAAATCTGTTTAAGAGCTAAAAAACAATTGTCCAGCTTAGTTGTTTTTGGCTTTAGCTTACCAACACATTATGTAAAACATGATTTCATAAAATTGCTCGGAACTGAATCTTGCTTGTTTCTAATAGCAGCAAAATGTGAACTAGTTATGCAATCATGTCAAAGCATTCATTGTGTCAGCTTTTTCATAAGATCCCCGGCCTAAATCTGATTACATTAAGAGATTTGTTAAAGGCAGGCTATACAAAGTGCAAGTCTATGTAACAGAGAGAAAATGTCTTTAGGAACCTGTCATAGTCTTTCTACTGAATTAGTCAGCTCAGATGATGTCATAGTTAAGTGCCATTCACAGATGCAACCTGGAGGTTTGCTTATGATTGACATTTGAGATTTCAGGAACACAtcatgtttaattcatttttttcattgctttctatttcttttttaatacagaacCCAAATCAATGCCAAATTGCTATTACTGTTAcataatgtttttgtatgttttctgaaagttaattaaatcatgCACCTACAATGTTTTAGGTAGAGGGTTTCATTTTTCTCATCTTGTGTTTGGTAAACTATTCCAATTGTTATCCTCCAGGCATCACTGTAGCCAATCAGGACAaacttatattaaaaaaaaaaacacttaggAATTcaacatcaaaactttgattaATTAGAAAATTCGAAACGAATTATGAAATATGCAgctgaaaacacacaggaaTATAAAAACAGATCTTTTTGAAAATAGTACTGTTacagataaaacattttttgtctttgtttttgtacatttctattAGGACAGCCAACATCTAACTGAAAACATCCTTCAAAGGGCTGAAAAGTAACCACCTATCATACTCAACTCATTGTGTTAATTTTACTGACTGCTTGCACAGCTTGTGCTGGTCGGTACATCATGACCTTCGTGGTcatgtcaaatatatttatagcgATTATGGGTACAGtttcaaaatagttttgaatacagttttaatatttgaaaataaataaatacaatatacacaaataacatAAGGGTCCTAAGAAGGCATTGCTAAGTTAATACAGTGTTAACCCAAACATTCAAGAACTGTAATCTAGTAGGACCAccttaaaatatgtaatgacaCTATCTCTACTGTCACGACTttttcccagcatgcaacaATAATTGTCATacttatataaatgcatatctcCATTTGCATCTCCATTTGCATCTCCATTGATTGTATTATAAAATCGAAGGCACTCATTTCAATGACACGCATTTGAATGTAGGATCCCTAGGAGCAGCAGTAGCTAAAGAGTCAGTGAGGTGGGACTGCAGGGAATATATTAGTGGATAACTGTCATCATCAGCCCATTATGATCTTCTTCTGGCCTCCCTGACATGTTTCCTACAGCTTCCTATTCCCAGTTACATCTggaaagtttattatttaatcttctatCTGGTTGtcttggtcttttttcatctcttgggatctatTCAATAGCTTTGATCTGTttcagcccattgccattttaacatacaCCCACgctctctttttctctcatacagttaggtccataaatatttggacagtgacacaattgtcataattttggctctggattccagacttcaggcagtcattgactgcaaaggatttgcaaccaagtattgaaactcacaatttaattcatgattatgttagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121043 lncRNA upstream 78061 7656976 ~ 7657282 (+) True G97072
TU121042 lncRNA upstream 80694 7654124 ~ 7654649 (+) True G97071
TU121030 lncRNA upstream 86036 7633381 ~ 7649307 (+) True G97059
TU120942 lncRNA upstream 370359 7364383 ~ 7364984 (+) True G96992
TU120877 lncRNA upstream 510005 7216640 ~ 7225338 (+) True G96936
TU121094 lncRNA downstream 22205 7772789 ~ 7773054 (+) True G97118
TU121096 lncRNA downstream 22689 7773273 ~ 7773477 (+) True G97120
TU121109 lncRNA downstream 69091 7819675 ~ 7820187 (+) True G97133
TU121128 lncRNA downstream 126856 7877440 ~ 7878313 (+) True G97152
TU121133 lncRNA downstream 138025 7888609 ~ 7892787 (+) True G97157
AMCG00015315 mRNA upstream 2146 7732409 ~ 7733197 (+) True AMCG00015315
AMCG00015311 mRNA upstream 27296 7698847 ~ 7708047 (+) True AMCG00015311
AMCG00015308 mRNA upstream 148018 7582052 ~ 7587325 (+) True AMCG00015308
AMCG00015307 mRNA upstream 170943 7560624 ~ 7564400 (+) True AMCG00015307
AMCG00015309 mRNA upstream 177046 7504531 ~ 7558297 (+) True AMCG00015309
AMCG00015312 mRNA downstream 8487 7759071 ~ 7768474 (+) True AMCG00015312
AMCG00015317 mRNA downstream 33949 7784533 ~ 7794955 (+) True AMCG00015317
AMCG00015322 mRNA downstream 80013 7830597 ~ 7835163 (+) True AMCG00015322
AMCG00015316 mRNA downstream 95008 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015323 mRNA downstream 150537 7901121 ~ 7901720 (+) True AMCG00015323
TU120961 other upstream 319581 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 654555 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 735760 6997633 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 2271226 5426879 ~ 5464117 (+) False G96420
TU121162 other downstream 200226 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 323597 8074181 ~ 8078761 (+) True AMCG00015334
TU121298 other downstream 374024 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 482840 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 538386 8288970 ~ 8293527 (+) False AMCG00015356

Expression Profile