RNA id: AMCG00015312



Basic Information


Item Value
RNA id AMCG00015312
length 1095
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00015312
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7759071 ~ 7768474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGGGGGAGACGGACATTATTGAGTGCCTGAGCCAGAACTCAGCTGGATCTTCCAGAATCCTGTTTCATATTTTCTCTTCAGGTCCAAAGGATGCCTTCAGTACTATAGCACTGCTGATAGGAAGTGCAATTGGGGCCGTGCTGATGTCACTCCTGTGCTGCCTGATCCAGTTCATTAAAAAGcgaaaaaacaaaccatcagTAGAGCGCACCAAGGAGGAGGACACAGCTGAACTGATGCAGATAAATGTGGAACAGCTGAGCCCCCTACAGGAAGAGGACATCTACGCCAACAATACCATGCTGTCggagaagagaagggaggagccGAGGGAACTTCAATATGAACTTCACTATGCCTCCTTGGATTTCTCCAAACCGCAGCATGAAGAGGGCATGAGCGAGACCGAAGGCACAGCAATCCGGGGCTCCTCAGAAAACCACACGGATTACGCTGAGACAGACCAGGGAGGTACAGACCGTGACCCCTACGCCACTCTGCAGATCTCTAATATTGCCTCGGACTATGGTGTAATAAAGGGGGGTGACGGATCAGAGAGGGAGGACAGTGACACTCACATTGCACTGGACACAGCAGTCGCCCACAGGGGAGGAGCCGGGGAATTCAAGCTCACAGCCATCTGACTGGTGCAGACCTCTGTGTGTATTTGGAAACCATTCCCAGCAAGTTTTCTAGTCTATCTTTCAAGAGAAGTAACTCAGCTTTGATTAGATTTAAGCTTCCATGAATTAATATTTCCCCCCTGATGTTTCTGAATTTAAACCACAATTTTAGACCTTCTGCAGTCGATATGAAACCTCtttgcagtatttattttgggtTCAGAATCTCTGGATGAAGGTTCTGTACTTACGTTATGAAGTTCGGTTTTGTTACTTCATAGTTTCCACAAATTTTAGAATGATTTAATCAGACTTGGACTGTGTACCAGTCAGGccaccatttatatttcatcaCTTTATAACAATAaggtttgaaaacaatgtaaaataatgtatttgcaacAGCACTAAGATATCAATTGAATTTCAGTAAATTCTGCTATTCATCAACGTTTCTGCATGTATTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121043 lncRNA upstream 101789 7656976 ~ 7657282 (+) True G97072
TU121042 lncRNA upstream 104422 7654124 ~ 7654649 (+) True G97071
TU121030 lncRNA upstream 109764 7633381 ~ 7649307 (+) True G97059
TU120942 lncRNA upstream 394087 7364383 ~ 7364984 (+) True G96992
TU120877 lncRNA upstream 533733 7216640 ~ 7225338 (+) True G96936
TU121094 lncRNA downstream 4315 7772789 ~ 7773054 (+) True G97118
TU121096 lncRNA downstream 4799 7773273 ~ 7773477 (+) True G97120
TU121109 lncRNA downstream 51201 7819675 ~ 7820187 (+) True G97133
TU121128 lncRNA downstream 108966 7877440 ~ 7878313 (+) True G97152
TU121133 lncRNA downstream 120135 7888609 ~ 7892787 (+) True G97157
AMCG00015310 mRNA upstream 8487 7735343 ~ 7750584 (+) True AMCG00015310
AMCG00015315 mRNA upstream 25874 7732409 ~ 7733197 (+) True AMCG00015315
AMCG00015311 mRNA upstream 51024 7698847 ~ 7708047 (+) True AMCG00015311
AMCG00015308 mRNA upstream 171746 7582052 ~ 7587325 (+) True AMCG00015308
AMCG00015307 mRNA upstream 194671 7560624 ~ 7564400 (+) True AMCG00015307
AMCG00015317 mRNA downstream 16059 7784533 ~ 7794955 (+) True AMCG00015317
AMCG00015322 mRNA downstream 62123 7830597 ~ 7835163 (+) True AMCG00015322
AMCG00015316 mRNA downstream 77118 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015323 mRNA downstream 132647 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015324 mRNA downstream 182089 7950563 ~ 7956114 (+) True AMCG00015324
TU120961 other upstream 343309 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 678283 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 759488 6997633 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 2294954 5426879 ~ 5464117 (+) False G96420
TU121162 other downstream 182336 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 305707 8074181 ~ 8078761 (+) True AMCG00015334
TU121298 other downstream 356134 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 464950 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 520496 8288970 ~ 8293527 (+) False AMCG00015356

Expression Profile