RNA id: TU121164



Basic Information


Item Value
RNA id TU121164
length 718
lncRNA type sense_over
GC content 0.61
exon number 3
gene id AMCG00015324
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7946208 ~ 7956114 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGTCAGCACCACGGAAGACGTGATAGTAGATACAAGAGTTTGAGAGGCGGCGAGGAGAGAAAGGATTGTCCAGCGGAGCGCCCAGCCCGTTTCCTCAGCCGGCATTAGAGCCAGGGAGAGCGGACGCGGCCACGGAGTCACCCCGCTCGGCAGCACGACCTTCACCGGAGCGGCACTGACCCGCCTCGGCGCCCCCGCTGACCGGGGCTGGACAGCACCGGCCCCCGCTGCAGCTGGACCGGCTTCTCGGCGATTCCgtgcgttttatttatttggattgtattgatgtttgtttgtttatttgtcgtTTTATTTTGACGTTTAAAGTCACGAGTGGGTGACAGGGGCGCTTGAGTGTTGTTGTCACACGGCGTCCCGGTGACAGctgggcgagagagagagacagcggcCGACACCGACCGGCCCTCGCTACACCGGCGCCTCCGTCGATGGTCGTACAGAGGCCGGGTCTGCCGATGGACAAAGTGTgacggacagacagagacagagagagagggagaaggagggaggacATCTGTAGCCACACTGCCCCagcacagagcgagagagagggtgagagggaaGGAGACTTTTACAAACACAGtGATGTCCAGTCGAGATCGTCGCTCCGACCTGTACATTAAAGCTGAACCCTCCAGCCCCgagggggggggcgggggcggcGGCCGTCAGAGCCCAGGGGCCTCCTCAGACTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121153 lncRNA upstream 15186 7920405 ~ 7931022 (+) True G97172
TU121137 lncRNA upstream 48831 7896205 ~ 7897377 (+) True G97160
TU121133 lncRNA upstream 53421 7888609 ~ 7892787 (+) True G97157
TU121128 lncRNA upstream 67895 7877440 ~ 7878313 (+) True G97152
TU121109 lncRNA upstream 126021 7819675 ~ 7820187 (+) True G97133
TU121165 lncRNA downstream 7981 7958655 ~ 7962088 (+) True G97184
TU121190 lncRNA downstream 100849 8051523 ~ 8054827 (+) True G97206
TU121272 lncRNA downstream 140421 8091095 ~ 8101765 (+) True G97271
TU121264 lncRNA downstream 145712 8096386 ~ 8173011 (+) False G97265
TU121289 lncRNA downstream 164242 8114916 ~ 8116552 (+) True G97284
AMCG00015323 mRNA upstream 44488 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015316 mRNA upstream 97205 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015322 mRNA upstream 111045 7830597 ~ 7835163 (+) True AMCG00015322
AMCG00015317 mRNA upstream 151253 7784533 ~ 7794955 (+) True AMCG00015317
AMCG00015312 mRNA upstream 177734 7759071 ~ 7768474 (+) True AMCG00015312
AMCG00015325 mRNA downstream 13973 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015334 mRNA downstream 123634 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015343 mRNA downstream 173632 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015335 mRNA downstream 196671 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015345 mRNA downstream 247647 8198321 ~ 8201394 (+) True AMCG00015345
TU120961 other upstream 530446 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 865420 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 946625 6997633 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 2482091 5426879 ~ 5464117 (+) False G96420
TU121162 other downstream 136 7950810 ~ 7956094 (+) False AMCG00015324
TU121271 other downstream 123507 8074181 ~ 8078761 (+) True AMCG00015334
TU121298 other downstream 173934 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 282750 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 338296 8288970 ~ 8293527 (+) False AMCG00015356

Expression Profile