RNA id: AMCG00015327


Basic Information

Item Value
RNA id AMCG00015327
length 1521
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00015327
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7888625 ~ 7897453 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGATGTATCGTCAGTAGAAAGTCCTCTATCCTCTCAACGGCGCTTCCGGTGCTGAGCGGAAATGGAGGGCGGGGGGGGACGGATGTTGCTGCAACGCCGCCGACAATAACATTACAGCGTCGCGCCGAGCGAGAACAGCGAGAGGAGACAGGCAGCCAGAGCCGTGCAGGGAtgggttacttttaaaacatattttagtcGGATTTTGAAACAGTCTCACTACACACTGACCACAGGGTATGTGTCTGTTGTTTAACCACAGCGACCTCTCTCAGATGTCCGATGACCCACTCGTGTTTTTACCTggaccccccctccccataaataaacattagtcTGAGCTTTTCCTTAGTGTTACTGAGTAGCTACGCTGTTTTTTGCGGCTTTGAAATGGCTTATTCGGCACCCGATTCCGCAGACAAAgcGCTGCGCATGGCGATGGAGCTGGACGTGTTTGTGGGGAACACAACCATCATGGACGAGGAGGTGTATCAGCTCTGGCTGGATGGGTACACAGTGACGGACGCGGTGTCCATGCGGGTGCGCTCTGGGATCCTGGAGCAGTGGGGGGCGTGCCAGGCGGTGCTGGAGAGCGACACTACGGACCACTACCGCACCTTCCAGATGGCCGAGAGGCTGTTGCACTGCCCCAGCAAACTGGCCAATCAGCTGCTCTTCCAGATCCCCCCGCAGCGCCAGGCCATGCTCATAGAGAGGTACTATGCGTTCGACCCTGCGTTCGTGCGTGAGCTGCTGGGGAAAAAGCTCTCCAAGGGAACCAAGAAGGACCTGGATGATGTGAGCACCAAGACCGGCGTCACCCTGAAGAGCTGCCGCAGAcagtttgaTAATTTTAAGCGGGTGTTCAAGGTGGTGGAGGAGATGAAGGGCCCCCTGGTGGAGAACATCAAGCAGCACTTCCTGCTGTCAGACAGGCTGGCCAGGGACTACGGCGCAATTGTGTTCTTTGCGAACATTCGCTTTGAGACTGGGAAGAAGAAGCTTCAGTATCTGAACTTTGAGGATTTCGCCTTCTGTGCTGGTCAGCTGATCCAGAACTGGACTGTTGGTGCCGTAGACAGCATGGTGGAGGACATGGACAATCTGTCTCGGGCGCTGGTGAACATCGCGGCCAAACTCATGCACACAAAGGATGTCAGGGACTTCTTCATCGACCTGGTGGAGAAGtttatCGAGCCGTGTCGGTCTGATCGCTGGGTGCTGTGTGATGTCAAAGCCTTCCTGACGCAGTACATGAACTCCGCTAGGGCCCTCGATGCCTTCAAgcaacAGGCGATCTGGGAGCGCTACATGACAGTGATCAGGAGCTGCATCCTGAAGATGTACCACGAGTAGCCCCCCCTTCCGCTCCCTTccctctgttctctctctacaccccTCCCCTGTTTTTCAACGATTCAGACAGGCAGGTGTGACTGAGTTCCTGTGAggacctctgacccctgaccccagaGAGCTGACCGCAGTGCagcatgtttttacatttaatttaaataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121110 lncRNA downstream 68436 7819804 ~ 7820189 (-) True G97134
TU121106 lncRNA downstream 73223 7814894 ~ 7815402 (-) True G97130
TU121097 lncRNA downstream 108027 7780392 ~ 7780598 (-) True G97121
TU121011 lncRNA downstream 269108 7497942 ~ 7619517 (-) True G97041
TU120982 lncRNA downstream 480109 7408002 ~ 7408516 (-) False AMCG00015305
TU121210 lncRNA upstream 72144 7969597 ~ 7970757 (-) True G97221
TU121240 lncRNA upstream 104033 8001486 ~ 8016073 (-) True G97244
TU121429 lncRNA upstream 171327 8068780 ~ 8069037 (-) True G97395
TU121430 lncRNA upstream 172582 8070035 ~ 8091826 (-) True AMCG00015333
TU121431 lncRNA upstream 172582 8070035 ~ 8084294 (-) False AMCG00015333
AMCG00015329 mRNA downstream 2689 7877434 ~ 7885936 (-) True AMCG00015329
AMCG00015319 mRNA downstream 26878 7857079 ~ 7861747 (-) True AMCG00015319
AMCG00015318 mRNA downstream 54405 7833318 ~ 7834220 (-) True AMCG00015318
AMCG00015321 mRNA downstream 60511 7826681 ~ 7828114 (-) True AMCG00015321
AMCG00015320 mRNA downstream 62865 7821194 ~ 7825760 (-) True AMCG00015320
AMCG00015326 mRNA upstream 6125 7903578 ~ 7908926 (-) True AMCG00015326
AMCG00015330 mRNA upstream 17618 7915071 ~ 7921825 (-) True AMCG00015330
AMCG00015328 mRNA upstream 41684 7939137 ~ 7941984 (-) True AMCG00015328
AMCG00015331 mRNA upstream 61513 7958966 ~ 7961889 (-) True AMCG00015331
AMCG00015332 mRNA upstream 74411 7971864 ~ 7994682 (-) True AMCG00015332
TU121101 other downstream 102183 7786087 ~ 7786442 (-) True G97125
TU120782 other downstream 966984 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 1188268 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 1504005 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 1824466 6049477 ~ 6064159 (-) False AMCG00015256
TU121448 other upstream 233854 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 512534 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 643735 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 682846 8580299 ~ 8581101 (-) False AMCG00015372
TU121952 other upstream 894655 8792108 ~ 8794774 (-) False AMCG00015393

Expression Profile