RNA id: TU121430


Basic Information

Item Value
RNA id TU121430
length 1271
lncRNA type sense_over
GC content 0.53
exon number 10
gene id AMCG00015333
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8070035 ~ 8091826 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCATTGATTTTTATTGGCCTAAGCCAGGTAATATAACACCATGCCTACATGAAGGCTCTCATGAAACTTTTTGGGTGTTACAGTACAATAACATCTAATCTATTGTGGagaaattataattgtatgtgcttagttcagtgcagaaaaGTGTGCATTTTAGATGAGAAGGTTTAGTTTACCAAAGCTGTGAGGTGCTGGAAAAGCTTTGACAGTGCACCTTGATAgtgcttgaatttgaattttgaaatgctttatgAACCCTGGTAAGAGCTCCACACCAGCACTGCCCCTGTCCACCCCCATTCTACCCCTGTCCACACCAGCCCACTGACTACAtactgcccctctctctcctgtctgtccCCGTGTCCAGTTGAAGTCAGAGAGGGATCTGGACAAGGTGAAGGGCTTCAAGCTGGAGGAGCTGTGGCTGGAGCACAATCCCCTGTGCGACCACTTCAAAGACCAGCCGTCCTATATCAGCGCCATCAGAGAGAGGTTCCCCCGACTGCTCAGACTGgaTGGTCATATCCTTCCTAGACCGATAGCGTTTGATGTTGAAGCCCCAACCACACTCCCGGCCTGCAAGGGCAGTTATTTTGGTTCGGAGGAGATTAAGAGTGTGATTCTGCGCTTCCTGCAGCAgtaCTACAATGTGTACGACTCAGGGGACAGACAGCCGCTTCTAGATGCCTATCACGATGGGGCCTCCTTCTCCCTCAGCATCCCCTTCTCCTTACAGAACCCCTCCAGGTGCAGTTTGGGAGATTACCATAAGGACAGTCGCAACATCAAGAAGCTGAAAGACCCCACCACGCGGTTCCGCCTGCTGAAGCACACGCGCCTGAATGTGGTGGCCTTCCTGAACGAGCTGCCCAAGACGCAGCACGACACCAGCTCCTTCGTAGTGGACGTCAACACCTACACTaaCACGTTACTGTCCTTCACCATCAGTGGAGTGTTTAAAGAAGTGGATGAGAAGTCTCGGGACACAGTGCGTGCGTTCTCTCGTGTGTTCATCACTGTCCCCGCAGGAAACGCTGGgctgtgTATAGTGAATGATGAGCTGTTTGTGCGGAACGCGACGACAGAGGAGATCAGACGGGCATTCGCTACGCCGGCCCCCACGCCTTCCAGCAGCCCCGTGCCCACGCTGACCGCTGCGCAGCAGGAGATGCTGTCCGCCTTCTCCCTGCAGTCCGGCATGAACCTGGAGTGGTCACAGAAGTACGTACTGCTGGACACTGTCCACAGTGGGACAGGGACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121429 lncRNA downstream 998 8068780 ~ 8069037 (-) True G97395
TU121240 lncRNA downstream 53962 8001486 ~ 8016073 (-) True G97244
TU121210 lncRNA downstream 99278 7969597 ~ 7970757 (-) True G97221
TU121110 lncRNA downstream 249846 7819804 ~ 7820189 (-) True G97134
TU121106 lncRNA downstream 254633 7814894 ~ 7815402 (-) True G97130
TU121445 lncRNA upstream 32442 8124268 ~ 8126464 (-) True G97409
TU121449 lncRNA upstream 39481 8131307 ~ 8134115 (-) True G97411
TU121482 lncRNA upstream 131373 8223199 ~ 8224873 (-) True AMCG00015348
TU121486 lncRNA upstream 131373 8223199 ~ 8224873 (-) False AMCG00015348
TU121481 lncRNA upstream 185618 8277444 ~ 8283629 (-) False AMCG00015348
AMCG00015332 mRNA downstream 75353 7971864 ~ 7994682 (-) True AMCG00015332
AMCG00015331 mRNA downstream 108146 7958966 ~ 7961889 (-) True AMCG00015331
AMCG00015328 mRNA downstream 128051 7939137 ~ 7941984 (-) True AMCG00015328
AMCG00015330 mRNA downstream 148210 7915071 ~ 7921825 (-) True AMCG00015330
AMCG00015326 mRNA downstream 161109 7903578 ~ 7908926 (-) True AMCG00015326
AMCG00015342 mRNA upstream 17647 8109473 ~ 8113457 (-) True AMCG00015342
AMCG00015337 mRNA upstream 23621 8115447 ~ 8121854 (-) True AMCG00015337
AMCG00015338 mRNA upstream 34687 8126513 ~ 8131083 (-) True AMCG00015338
AMCG00015336 mRNA upstream 42463 8134289 ~ 8143347 (-) True AMCG00015336
AMCG00015341 mRNA upstream 52673 8144499 ~ 8146914 (-) True AMCG00015341
TU121101 other downstream 283593 7786087 ~ 7786442 (-) True G97125
TU120782 other downstream 1148394 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 1369678 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 1685415 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 2005876 6049477 ~ 6064159 (-) False AMCG00015256
TU121448 other upstream 39481 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 318161 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 449362 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 488473 8580299 ~ 8581101 (-) False AMCG00015372
TU121952 other upstream 700282 8792108 ~ 8794774 (-) False AMCG00015393

Expression Profile