RNA id: TU121271



Basic Information


Item Value
RNA id TU121271
length 779
RNA type TUCP
GC content 0.56
exon number 8
gene id AMCG00015334
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8074181 ~ 8078832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TACACCTTACGGTGGGAGGCCGAATCGCCGGGGTGACAATCACTACGACCGCAACCGGGGAGGCGGTGGCAACGCAGGGGGGCACCGCCCTGGCAGAGGCGGGCCCCCCCGAAAAAGCTGGTTCAAAATGACGATCCCCTGTGGGAAGAAGTACGACAAGACGTGGCTGCTGACTGCCCTGCAGGGCCTATGCACCGTGCCCTTCACCCCAGTACAGtatCACTATGAAGGGAACAAGGTGGTGTTCTATGTGGAGGACGCCACTACAGCCAACGCGCTGTGCAAAGTGTCACGAAAAATCACTGACACTGAGGGGTACAAGGTGTCAGTCATCATgcacccctcccccccgccTGCCAGCGTGCTGAACGAACTGAAGCCGGAGGACCTGGAGCACCTCAagcaatGTATGAGTAAGCGTTTTGATGCCTCCCAGCAAGCTCTGGATCTCAACAGCATTCGCACTGACCCAGacctGGTGTCTCAGAATATCGAGGTGATTCTGAACAGGAGGAGCTGCATGCAGGCCATCAATGACATCATCAAGCAGAACATCCCTGAGCTCCTCTCTCTCAACCTCGGCAACAACAGACTCTACAAACTGGATGAAGTGTCTGAGCTGGTGAGCAAAGTGCCCAACCTGAAGATCCTCAACCTCTCCAACAACGAGTTGAAGTCAGAGAGGGATCTGGACAAGGTGAAGGGCTTCAAGCTGGAGGAGGTGTGGCTGGAGCACAATCCCCTGTGCGACCACTTCAAAGACCAGCCGTCCTATATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121190 lncRNA upstream 19354 8051523 ~ 8054827 (+) True G97206
TU121165 lncRNA upstream 112093 7958655 ~ 7962088 (+) True G97184
TU121164 lncRNA upstream 123507 7946208 ~ 7950674 (+) False AMCG00015324
TU121153 lncRNA upstream 143159 7920405 ~ 7931022 (+) True G97172
TU121137 lncRNA upstream 176804 7896205 ~ 7897377 (+) True G97160
TU121272 lncRNA downstream 12334 8091095 ~ 8101765 (+) True G97271
TU121264 lncRNA downstream 17625 8096386 ~ 8173011 (+) False G97265
TU121289 lncRNA downstream 36155 8114916 ~ 8116552 (+) True G97284
TU121301 lncRNA downstream 48014 8126775 ~ 8128889 (+) True G97293
TU121287 lncRNA downstream 68643 8147404 ~ 8148059 (+) False AMCG00015335
AMCG00015325 mRNA upstream 103498 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015324 mRNA upstream 118067 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015323 mRNA upstream 172461 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015316 mRNA upstream 225178 7845592 ~ 7849003 (+) True AMCG00015316
AMCG00015322 mRNA upstream 239018 7830597 ~ 7835163 (+) True AMCG00015322
AMCG00015343 mRNA downstream 45545 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015335 mRNA downstream 68584 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015345 mRNA downstream 119560 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015344 mRNA downstream 136254 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015346 mRNA downstream 180412 8259173 ~ 8264168 (+) True AMCG00015346
TU121162 other upstream 118087 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 658419 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 993393 6997633 ~ 7080788 (+) True AMCG00015293
TU120766 other upstream 1074598 6997633 ~ 6999583 (+) False AMCG00015293
TU120220 other upstream 2610064 5426879 ~ 5464117 (+) False G96420
TU121298 other downstream 45847 8124608 ~ 8126457 (+) True AMCG00015343
TU121352 other downstream 154663 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 210209 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 216326 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 263732 8342493 ~ 8432120 (+) False AMCG00015365

Expression Profile