RNA id: TU121287


Basic Information

Item Value
RNA id TU121287
length 239
lncRNA type sense_over
GC content 0.55
exon number 2
gene id AMCG00015335
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8147345 ~ 8149159 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCGGAAGCAGCGTGTCGCTCTGAAGGCGAGAGAGATaaagcgagggagagagagacacagagggaaatTGATAGAAAAGTAGACAGGATATCGTTAAAGGcataatagtaaaaaaatagaagaaagtgACCGCTTCTGCTCTCCACACGGGGACAGTTCCGACCCGATGGCCCACCAGATTCGGACGGTATCGGAGGGGGCGGAGTCCTTGCCCGGGGAGGGGGAGGGCCCTGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121301 lncRNA upstream 18515 8126775 ~ 8128889 (+) True G97293
TU121289 lncRNA upstream 30852 8114916 ~ 8116552 (+) True G97284
TU121272 lncRNA upstream 45639 8091095 ~ 8101765 (+) True G97271
TU121190 lncRNA upstream 92577 8051523 ~ 8054827 (+) True G97206
TU121165 lncRNA upstream 185316 7958655 ~ 7962088 (+) True G97184
TU121262 lncRNA downstream 17518 8165577 ~ 8167587 (+) True G97265
TU121266 lncRNA downstream 17518 8165577 ~ 8167771 (+) False G97265
TU121334 lncRNA downstream 49013 8197072 ~ 8198473 (+) False AMCG00015345
TU121336 lncRNA downstream 52922 8200981 ~ 8201857 (+) False AMCG00015345
TU121356 lncRNA downstream 94718 8242777 ~ 8244987 (+) True G97347
AMCG00015343 mRNA upstream 22520 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015334 mRNA upstream 68572 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015325 mRNA upstream 176721 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015324 mRNA upstream 191290 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015323 mRNA upstream 245684 7901121 ~ 7901720 (+) True AMCG00015323
AMCG00015345 mRNA downstream 50262 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015344 mRNA downstream 66956 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015346 mRNA downstream 111114 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015356 mRNA downstream 140956 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015358 mRNA downstream 147765 8295824 ~ 8303048 (+) False AMCG00015358
TU121298 other upstream 20947 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 68643 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 191310 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 731642 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1066616 6997633 ~ 7080788 (+) True AMCG00015293
TU121352 other downstream 85365 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 140911 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 147028 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 194434 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 234638 8382697 ~ 8395409 (+) False AMCG00015363

Expression Profile