RNA id: AMCG00015345



Basic Information


Item Value
RNA id AMCG00015345
length 1158
RNA type mRNA
GC content 0.64
exon number 5
gene id AMCG00015345
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8197072 ~ 8201857 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGCCCGAATCGGAATCTCCTTCAACCCTGTGcccctgccctccctccctccctccctgtggGCGGGGGCGGGGCTGTGATGAGGATCTGACCTGCCTGAGCTGGCTGCACCAGAGCACTGACCTGCTGAGGGAGCTGCGTCTGGGGCCcggggagagggaggcagggagcggggggcaggagggggagggagaggagcaggGCGGAGGGAGGGGGGGGCCTCACCCAGCCTTGGCCACCTCCTCCCTCGCTCCCCCCGCCCCGGCCACCGGCAGCCCCCCCAAGCCACCCTACTCCTTCAGCAGCCTTATCTTCATGGCCTTAGAGGACTCCCCAGGCAAGAGGCTGCCAGTGAAGGCCATCTATGACTGGATCCTCTCTACCTTCCCCTACTACCGCAGCGCCCCCTCTGGCTGGAGGAACTCGGTGCGCCACAACCTGTCACTCAGCAAGTGCTTCCACAGGATGGGAAGAGACAAGAGCCGGGGCGCAGGGAAGGGCTCTCTGTGGTGTGTACACCCTGAGTACAGACCAGCCCTACTGGAGAGCCTGAGGAAGACACACTGCCACACCAGCCCCCCACTGTCAGAGGTCATCGTTCCGGAAGCAGTCATCTACGACCCAGACAGTGTGGAGTACACGGAGGACCCCTCCCCCTGGCTGGGGCTGTGCCCTCTGAGTGCCGACCTCGGCGACGAGCACAACTACAGCGGTCTCTTCCGGCTGGCCGCCTGCCTGGCTGGGGCGGGGGGCGTGGCCCTGCAGGTGGAGGTGGGCGTGTCCGAGGAGCTGGTTGCGATGGACACcatggagctggagctggaggaggagaaggaccCTTTGACGGACAGCGGCTACATCGAATACCACGAGTTCCTGCTTCTGCCCGGGGGAGGTCCTGAGGAGGAGGGCGGGGAGATGGGCGAGGTCACCGTGCTGCAGCTGGACCAGGAGGTGCAGGAGGCGGCCGGCattcaccctctctctctggagggagagaagcagagagaaatgcagggagggaaggaggaagagaaaagcTTCCGACACAAACGCACAAAGCCAGCGCACTGCCAGACGACTGTATTGTCACTGTTATCACCATGCTTACTGCTGCTCTGTGGGATGGGGACCACCCTACAGAATGAACTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121264 lncRNA upstream 25310 8096386 ~ 8173011 (+) False G97265
TU121266 lncRNA upstream 30550 8165577 ~ 8167771 (+) False G97265
TU121262 lncRNA upstream 30734 8165577 ~ 8167587 (+) True G97265
TU121287 lncRNA upstream 50262 8147404 ~ 8148059 (+) False AMCG00015335
TU121301 lncRNA upstream 69432 8126775 ~ 8128889 (+) True G97293
TU121356 lncRNA downstream 41383 8242777 ~ 8244987 (+) True G97347
TU121359 lncRNA downstream 46717 8248111 ~ 8250285 (+) True G97350
TU121379 lncRNA downstream 101991 8303385 ~ 8305677 (+) True AMCG00015362
TU121380 lncRNA downstream 106186 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA downstream 106186 8307580 ~ 8312199 (+) True AMCG00015359
AMCG00015335 mRNA upstream 49162 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015343 mRNA upstream 73437 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015334 mRNA upstream 119489 8074308 ~ 8078832 (+) False AMCG00015334
AMCG00015325 mRNA upstream 227638 7964647 ~ 7970683 (+) True AMCG00015325
AMCG00015324 mRNA upstream 242207 7950563 ~ 7956114 (+) True AMCG00015324
AMCG00015344 mRNA downstream 13621 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015346 mRNA downstream 57779 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015356 mRNA downstream 87621 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015358 mRNA downstream 94430 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015362 mRNA downstream 102175 8303569 ~ 8304117 (+) False AMCG00015362
TU121298 other upstream 71864 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 119560 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 242227 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 782559 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1117533 6997633 ~ 7080788 (+) True AMCG00015293
TU121352 other downstream 32030 8233424 ~ 8294330 (+) True G97343
TU121351 other downstream 87576 8288970 ~ 8293527 (+) False AMCG00015356
TU121378 other downstream 93693 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 141099 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 181303 8382697 ~ 8395409 (+) False AMCG00015363

Expression Profile