RNA id: TU121351



Basic Information


Item Value
RNA id TU121351
length 894
RNA type TUCP
GC content 0.59
exon number 7
gene id AMCG00015356
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8288970 ~ 8293681 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTCCGCCCCGCTGCCCTGTGACGGCGGCGCGGCGGGGAAGGGGGAGGACGGAGCGGCAGGTACGCAGCGACACCGGGGCCGGGGCCGCTACCGACACACCGCACCCGCTGCCCCACGATCCTGACTGACACAACTGGCTTGTCTGCCCCCTCAAACGAGTAAACTTTATAGAAAgAGCCAACAGTCCCTCCCTGGCTGCAGTGAGAGGTCCTCAGGCAGTTACTATGACCTGCTGGGGGTGACCCCGGATGCCTCTGTGGAGCAGATTAAGCAGGCCTTCTTCGTCAGGTCCAAGAAGCTGCACCCAGATAGTGACCCCTCAAACCCAGGTCTGCATGCGCAGTTTGTGGCACTCAGCGAAGCCTACAGGGTGCTGAGCCGGGAGACGTCGCGTCGGGAGTATGACACACAGCTGAGAGCGAGACACAGGCACTgggacagacagacgcacaccgCCGCACCGCactacagCTCGGAAAGTTCTGAGCACGTGCGGTACTCGGAACAGTTCCGCTATGCCCCACCCCAGGACCTCAGTCCTGACCAATTGGAGCGCAAGAGGAAGCGGAACTTGCGCCTGGTTGGCTACTGTATGCTGGCGATGATTGGCAGCATCGTCGCGCACTACTTCGGTTTCAGaAAACTTGAAGAGATGCACAATAGCTTCATGGAGGAGAAGGACAGAGCGATCACAGAGATCTACAACACCTCCAAGGAGAGAGCCAgAGTGAACGGCTTCCAGAAACAGACTGCGATCCTGAGACAGAAGCACGCCGAGTTTGTGGAAAAATACCAacggagggaggagagggggacagaCGACAAgtagagaggaaaagagagagagggagggagagagagagcttgtGAACCTCAATAAAAGCTCATCCCGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121359 lncRNA upstream 38685 8248111 ~ 8250285 (+) True G97350
TU121356 lncRNA upstream 43983 8242777 ~ 8244987 (+) True G97347
TU121336 lncRNA upstream 87113 8200981 ~ 8201857 (+) False AMCG00015345
TU121334 lncRNA upstream 90497 8197072 ~ 8198473 (+) False AMCG00015345
TU121266 lncRNA upstream 121199 8165577 ~ 8167771 (+) False G97265
TU121379 lncRNA downstream 9858 8303385 ~ 8305677 (+) True AMCG00015362
TU121380 lncRNA downstream 14053 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA downstream 14053 8307580 ~ 8312199 (+) True AMCG00015359
TU121401 lncRNA downstream 110625 8404152 ~ 8411881 (+) False AMCG00015363
TU121407 lncRNA downstream 183695 8477222 ~ 8480537 (+) True G97383
AMCG00015346 mRNA upstream 24802 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015344 mRNA upstream 64197 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015345 mRNA upstream 87576 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015335 mRNA upstream 139811 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015343 mRNA upstream 164086 8124306 ~ 8124884 (+) False AMCG00015343
AMCG00015358 mRNA downstream 2297 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015362 mRNA downstream 10042 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015359 mRNA downstream 14491 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015357 mRNA downstream 78939 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015363 mRNA downstream 89142 8382669 ~ 8411044 (+) True AMCG00015363
TU121298 other upstream 162513 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 210209 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 332876 7950810 ~ 7956094 (+) False AMCG00015324
TU120961 other upstream 873208 7415369 ~ 7415762 (+) True G97006
TU120767 other upstream 1208182 6997633 ~ 7080788 (+) True AMCG00015293
TU121378 other downstream 1560 8295087 ~ 8302969 (+) True AMCG00015358
TU121387 other downstream 48966 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 89170 8382697 ~ 8395409 (+) False AMCG00015363
TU121569 other downstream 235491 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 249797 8543324 ~ 8544782 (+) True G97513

Expression Profile