RNA id: TU121378


Basic Information

Item Value
RNA id TU121378
length 5107
RNA type TUCP
GC content 0.54
exon number 8
gene id AMCG00015358
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8295087 ~ 8303048 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagacgggcgactgactgactgactggccgGCCGGTGGACTGGGATCCTCACACCTGTACTGACCCGACCTGCGCGCCTGTGAGCGGCCGGGACCGCAGTCGTGCTGGGGGGGTGTGCGCGGAGACTTTGGACGGGCAGCCACGTTTGTGTATCCTGAGAAAATGAGCAACCGAGAAGTGCGGACTATAGCCAAGTAACATTCCTGGCGTATTGCTCAAATCCGAGGCAATATTATCATTTTGTTGCCTGTTCATTGACTGACACTGAACCCGGAATGGATTAAAAAGTGTGGCGGAGACGTCTTTTCGGTTTGTTGGAGAAGAAGCAGCGATCCGAATATTTACTGTACAGCATAATATAgcctttaatatttaatataatacattctagtatatattatatactatactatattatgTCCTGTCCTGCCCTGTCCTGTCAATGACATCGGTGTGACGCGATTTCCCGGCTCTCCAAAACCAAACACGTTTCAGCTGCTCGGTTTGACACCAGGGTCAAATCAGCAGAACCGAATTCAAACGGGATTCTACATTCTACGACATCGATCGGAcccggggggcggggggcggcGTTGGCTTTGCTGGACCTGTCACACAATGACgcttttttcttcataaataaaacactgagtTGAGTTGAACGGGCTGGGCCGGGAGAAACGGGGTGAAAACAGCTCGTTTTGCCATCGGATTGTGCCCGCTGGGCGCTGCCCGCGATGGGGGATGTCAGAGCCCGCTGCCACACGGCCCGTAGCCGGAGTGTCCTGTCCTGTCTGCTATCCCTGCACGACAAGGATATTGTCATCCCGAAATAAAACCCTCAGCGGCTCCCCTCTTAAgagaaaaggaggaggaggtggaaaTAATAGAGGAGGCGAAAGAATACGGCCAGCAGCCCATCGAGCAGCAGAATAAACCCGCGGATCACTGGCAAGCTGCGACAATGGACGTGCGGTGGAAAGTCCTCCTGGCAGTGCTGCACTTCATCCTGGCGACGAGGATGCCGGCGTCTTTCGCCAAGGTAAGGCATGGTCCGCCACGCTGCCCCCgcgcctcctcctccccctctcagGTTCTCTTCTTTTAGCAACTTCCTAAACATGCATGCTGTCGTTTTCCGTGCAGGTGAACTGGCCGTTTATGTGCGGTTTATGTGGGCTATATATCAGCTGCACCCGTTCGGTCATTGACTTCGTGCTCggagttttcctttttttgcgGCGCTGCCGGAGCGGATCGTGCTCGCCGGCATGTAGCGGCTCCGGCGTGTCGGCGCAGCCCGGCGTCGCACGGCGGCTACGTGACTGTAACGGGGCCCCCGGCTTGACAATGCGGGGCTTGTTCGCCGGCTCGGGCTGCCCTGCTTTGTCGCGCCGCGTTTTCGGTTTTGTTTCGTCTCGGCAGCGGACGTAGTGCTTCACACTGGGGAGAATGCCCAGGGAACTGTGTAACTTAACGCACAGCTACAGTGGAAATGTGAATGCAgcctgatgatgatgatgatgatgatgatgaggatgtTTCCtgctattattatgattacgcATCCGTTTGAAGCAGTCCCAGGTGGGCGTCTCTGGCACCTGTGCTGGCCCAGGGGTGTGCGCGCGCCGCTTCCGGTGCCAGTCTCGCCAGGGCGCGCCAAGGTGACCGCGGGGGTACTGCGGGGACGCGGCTGGGCTCGGCTGGGCCAGCAGGTCAGAGCCCGGGATGTCTCTAATGGCATTGTGCATATTAGAAAGCTTGAACtgagttaaacaaaacatgaagtGATATCAGCTGCGTTGTTTTTTCCAGTGTCAGCAGCAGGGCTGGTGTCACAACATAtatgatagagagagagagagcagagcaaTGCCAGGTGTAGCAGTGTGGTAAACTGCCCAAAAAGGGCAAAACCTGGATGGGATTGGCAGTGTGCTGGGCAGGGGTGTGGGTATTACTTTTTGACTTTTCTGTAGTTTGTTGTTTCCTTTTGCGACCTAGAGGCTAAGTGGCACCGTGCCACCACACACAAGCCTCTGATGCCACATGGTAAGCCAGAGCACGGGGAACTTTCTTCCACTGGAGTTCAGgtccacccccccgccccccccagccAGAATTGGTAAAGTGGGCCAAatgcaataattaattttaaaaatacgttTTGCAACAAGTCACTCTGCTGTGAGGAACGCTGTGTACCAGTAGGCTTTGCATGAGctcgcccccacccccccccccctacatTGAATAAAAGTGCAAAACCGGTCTAGATGTACCTGCACTGTCGCAGGTGTGTTCTGCAGGACGTGTCCGGAGACAGACAGATTATGTCAGCACTGTCACTGTGCTGAGAGTCAGTGGGCTTTACCCCTGTGCGCGCACACCTGCAGCCCTCAATTgctaccccccaccccacATGAAATGCAGCTACCCCCCCAGAAATATGTCTGTCTggtgattgtgtgagtgtgtgtgccctATATCAGTACAGTAGCCAGTTGCAGGTTgagcaagaaaaataataataatcagatacTCTGAACAGGGTTATTGAAGTGTAAACAGTCTGGACTGGCAGCATACTGTACAGGTCCTGCATGACACACCTCCCTCTCTTATAAACTCACCCCCCCCTCTCGCTCCAAATCCCCCCTACCAGTCGACCCTTGCTGTACCACTTGGCCCAAAACCATGTTCCTTCAAGGTCCTTACGAGCTGCCAGCTGTGTACATGGGGCAGGGACGGGGGGATGTGGGGACAGGCGTGCAGAGACAGGGATTGTGGGGGGGAGGGCGGTTGCCTTTCTTTTGGTTTGATCACATAACTTGAAGGACAGAAGCCAGGAGCTGTTTTCTGTGGTAGATTACTGCCTGTGGCATGTTTACTAGGTGTTAaacagaggtcagaggtcaattGCAATTGCAACCCCTGCTGCCAGGACTGTGTatgagagggaggaggagagagagagaaaaggggcgAGAGGGATACAGAAACagagggaaatatatataaacatataaactgTCATACACGTATACACACTCATATCAAAACATGCACACTCagatacacatatacactctcaaacacatttatctacaaagaaacacacacacacacacacacggacacgcacgcatgcacacgcacgcacacattGGGAGTTCAGgggaacagagggagagagtgaatAAGCAGGGGCCAAAGTCTAAACTCTCTCCTACCAGTGGCATGGAGCCAATGACTGGCCTTAACACTGGGGCCCACGCTGGGGGGCCAggttgtgtgagagtgtgtgtagttGTGTCCAGACCCACCACCCCCCACATCTGTGTGTTCTtgatgtgcgtgtgtgtgtgtgttgtcgaCGTGTGTGGATGGATGCACTGCGTCTGGCTTTTTGATGCtgtgctctctttctctctcccccccctcaGCTGGCACACTGGCAGACTCCAGAGTCACACAGGACCCGAGAAGTGCTGAAGTGGCTGGACGTGTATAACCGCACGTTCTGCCAACCACGTGAGGTGCTGGTGGAGGTGGCGGCCGAGTTCCCTCAGGAGGTGGAGCACCTGTTCCTGCCTGGCTGTGTGGCGCTGCGGCGCTGCGGGGGCTGCTGCTCCGACGAGGCCCTGGAGTGCGTCCCCCTAAACAGCCGCACACTGCACGTGGAGCTGATGAAGACGAGGTACATGAAGCACGAGCTGGTACAGCTGCCCTTCACAGAGCACAGCCAGTGTGAGTGCAGatTGAAGAAAGACATGCATTTAGTTCCTGTGAGGTTGGAGCAGAAGGAGGGcaggagagagaagcagagacgACTGGGCAGTGGGATGGACCCTGCATCgcAGTGCAGGCCATGCCCAGGCCGGCGGAGGGTGCTGGTCCCAGGGTCCTGCGAGTGCCGCTGCACCCTCTCCACTCAAACCTGCCACCACAAGGGCCGCACTCTGAACCAGCACACCTGCAGATGTGAAGCTCTGGGCCGATGATGAATCCTGGACAGCAGAGACTGtcccttccttcctctctccatccatccatccatcccttCATCCATCCAGAATCTTTATCATCTTCTTCACGTCACCGAAAAAGGAGGAATGACTCCGTCCTGTCAGGGaaagaaaagacacacacattctgtctcacacacacacacacacactcactcacccaGATCAAGAGCCCCTTCAGTGGCAGCCTGGAGTggcagaggtgtgtgtgtgtgtgttggtgcatttgtgtgtgagcGTGAAATCACATGGTGGGGGGGAGGTGGATTATGGGAAACATTCCATACCATatacccccccgccccccaccacaaatacatacaaatgttcTTTTAACAAGCTCCCCTGTCCCCTGGTCCGGTTACACCACAAGGAATTTGGCAACTAAGAGAGAGAGCTCATCAGTGTTGGACAGGGACCCGACATGAGGATCCACTGGTCGACGGGACCTCCCTGTTCAACACAGAGCTGCGTCAGAGTGGGGAGAGCGGGGGGGATCTGGATCTCACATGACcccccagacagacagacagacggaccaacggagagagacagacagacagttttTCCCGGCCCTAGTTGTGGCCCCTGCTGAACGCCCATGTCTGCTCACTGCGAACCGAGGCTGATCACAGAGAGTGACTTTGCTGGCTGTGGAGCCCGTTCCCTGGAGCAGCCCTGGGGGAGACAGGACGGGGAGAGGAAGACCCACTTTTCACTTACCATATTTTTGGGATAccagggaagagagagagagattgtataGAGGCCCCCCTACCCCCATCAtcctctgtttgtgtttcttatttctgtttatttctggCAAAtttggtggtgtgtgtgtgtgtgtgtgtcactgagTGAGCTGTGacttatcttttttatttctctctctcttaaatgAAAAAGCCACCCCgaaaatctaaaaaaaagattttattttattgaaaaaacagtttgtgtgtttttgtgttggtcGGTTTGCCTGTGACAGTGTGTCAGGTAGTTAGCGTGCCTTGCGTCCGCGCCTCTGTCTGCTCCTCGGGAGTCCTGGAGCGTCAGTCGCGCTGATGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121359 lncRNA upstream 44802 8248111 ~ 8250285 (+) True G97350
TU121356 lncRNA upstream 50100 8242777 ~ 8244987 (+) True G97347
TU121336 lncRNA upstream 93230 8200981 ~ 8201857 (+) False AMCG00015345
TU121334 lncRNA upstream 96614 8197072 ~ 8198473 (+) False AMCG00015345
TU121266 lncRNA upstream 127316 8165577 ~ 8167771 (+) False G97265
TU121379 lncRNA downstream 416 8303385 ~ 8305677 (+) True AMCG00015362
TU121380 lncRNA downstream 4611 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA downstream 4611 8307580 ~ 8312199 (+) True AMCG00015359
TU121401 lncRNA downstream 101183 8404152 ~ 8411881 (+) False AMCG00015363
TU121407 lncRNA downstream 174253 8477222 ~ 8480537 (+) True G97383
AMCG00015356 mRNA upstream 1406 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015346 mRNA upstream 30919 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015344 mRNA upstream 70314 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015345 mRNA upstream 93693 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015335 mRNA upstream 145928 8147345 ~ 8149159 (+) True AMCG00015335
AMCG00015362 mRNA downstream 600 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015359 mRNA downstream 5049 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015357 mRNA downstream 69497 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015363 mRNA downstream 79700 8382669 ~ 8411044 (+) True AMCG00015363
AMCG00015365 mRNA downstream 124726 8427695 ~ 8433092 (+) True AMCG00015365
TU121352 other upstream 757 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 1560 8288970 ~ 8293527 (+) False AMCG00015356
TU121298 other upstream 168630 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 216326 8074181 ~ 8078761 (+) True AMCG00015334
TU121162 other upstream 338993 7950810 ~ 7956094 (+) False AMCG00015324
TU121387 other downstream 39524 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 79728 8382697 ~ 8395409 (+) False AMCG00015363
TU121569 other downstream 226049 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 240355 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 383799 8686768 ~ 8687680 (+) True G97558

Expression Profile