RNA id: TU121381


Basic Information

Item Value
RNA id TU121381
length 1710
lncRNA type sense_over
GC content 0.49
exon number 10
gene id AMCG00015359
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8307580 ~ 8312199 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGAGGCGCTCGGTCATTTTGTTCGGGTCCGGCTCTCTGGTGAGTGTTACTGGATGTGGTGGTTGTGTAGTGCAAGCTTGATGgttatgtgtttattaaacaaaGGGAACTTGAGACTGTTATAATGCACAACTGTAAAACTTCATTTAGTATGAGTTTATGGATTCATAGTAGATTGCATTTTCTCTAAGAATCTCGGTTCCTGTTGAGGGAACGCCTATTGGCTTAATTTTCGCTGTCTTGGGGGAAGTACCCACAATTAAAGATGTTAATGACTATCGCTAGGCTTTAATCCGGCTCCTCAATGATGAGAACTTTTCACAGACCTGTTCTGAACCGCTGTGACTGGAAGTTATTATTTCTGACTGGGGACCCGCAGTGCGCAGCCGCGTGGTGTGCGGTGTGCGCGCGCGATGGCACCGCCGCGTTCCCACGTGCGCGGCCTGTAGTGCGCATGTGCAGCGTTCCGCGAGTGCATACAGCGCGCATGTGCTAGattgtattgcattatattttacgATGCACGACTCCTAACATCTACTTTCGTCTTTTTACAGCGTTGTGAAGGCGGGACCATGATATCggCTCTGGTCCTGGGTTGTCCTGCTGCTGTCCCAGATGGCGGTGCCTCTGGCAGGCATTCTCCTGGGGTGACTGTGCCTTGAGGGGTCCTGATGCTGCAGGTGTTGATTCCATGTGAATAGAGCAGGTCCAGCACTACCtggtctgctgctgctgtagttGTCCAGTGCATGTGCTCTCTGCCCTGGTGGACTTTCATGGTACTGCAGAAGGGTGGCTTTGTGATGGGAGGCTGAGCCTGATGCTGGCTGTCCTGGAGGTTGCTGTCCCCATTAGCAGGACTTGTCTGCTCTTGCCTGGACCCTCTAGCTGCATGTCTGAGCTGATGAGGATGTCTGAAATTTAGTGTGAAGTGCATCAGTGATCGGTCTGGTTTCTGGATGTGGATGACTGAGCATGTCACCTGCCTGAAAGGTCTGTCCTCACCGCCAGTTGATGTTTGAGCCCCCGGGGACTGCATCCTCTTCAGTCCACAGCTCAGCTCACAGGTGATGTGCTCTTTCCCCACACCTGCACGATCACTGCTCTGGCTCATGAGGGGTGTCTGGGAGCTGCTGGACACCTTGTATTGTGCCCCTCTAGAGTGTGACTGGAGAACTAGAGCCAGAGCTGTAGAGGACTTGTTCAAGACTAATGTTTttgatctttaaataaaatgccaaaCTTTTAAAAGTGCTCAGTTTCCTAATTTCCTGTTGCCTGTGCACAAAGCTCTGCTTGGGTGCAGTGCTGTGGTGGTCAAACCCACCAGTGCATTGCTTTTAGCAGGTTTGTGTTGGACTGGCAGTGCTCTCTGCATGAATGCCTCCATGGATCAGGCTGTGTGCTTGGTGCCCCCCCACTGGCACTGGGATAGGAGGCTAATCCTGGGGGAGGGTTTAGGTGTTGCAAGTGCCTTGCAGTGTTTACCTCCTGTTAAAATAGTTGTACAAAATAGATTTAgcacatgcataataatgaaCAGGCCTGAGTTTGTTGATTGGTGATGGTCAGCATTCTTCTAGCAGCAGATATCAAAGTCCTCTACCAAATACTTGTGGCCAAGAGACTGAATACTtgtgtacatgttttttatttgtaataaatttgcaaagatttcaaacaacctttcatgttttcattatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121379 lncRNA upstream 1903 8303385 ~ 8305677 (+) True AMCG00015362
TU121359 lncRNA upstream 57295 8248111 ~ 8250285 (+) True G97350
TU121356 lncRNA upstream 62593 8242777 ~ 8244987 (+) True G97347
TU121336 lncRNA upstream 105723 8200981 ~ 8201857 (+) False AMCG00015345
TU121334 lncRNA upstream 109107 8197072 ~ 8198473 (+) False AMCG00015345
TU121401 lncRNA downstream 91953 8404152 ~ 8411881 (+) False AMCG00015363
TU121407 lncRNA downstream 165023 8477222 ~ 8480537 (+) True G97383
TU121616 lncRNA downstream 301056 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 311890 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 311890 8624089 ~ 8624687 (+) False G97547
AMCG00015362 mRNA upstream 3463 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015358 mRNA upstream 4532 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015356 mRNA upstream 13899 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015346 mRNA upstream 43412 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015344 mRNA upstream 82807 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015357 mRNA downstream 60267 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015363 mRNA downstream 70470 8382669 ~ 8411044 (+) True AMCG00015363
AMCG00015365 mRNA downstream 115496 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015364 mRNA downstream 121284 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015369 mRNA downstream 202514 8514713 ~ 8524559 (+) True AMCG00015369
TU121378 other upstream 4611 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 13250 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 14053 8288970 ~ 8293527 (+) False AMCG00015356
TU121298 other upstream 181123 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 228819 8074181 ~ 8078761 (+) True AMCG00015334
TU121387 other downstream 30294 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 70498 8382697 ~ 8395409 (+) False AMCG00015363
TU121569 other downstream 216819 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 231125 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 374569 8686768 ~ 8687680 (+) True G97558

Expression Profile