RNA id: TU121379


Basic Information

Item Value
RNA id TU121379
length 2293
lncRNA type sense_over
GC content 0.49
exon number 1
gene id AMCG00015362
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8303385 ~ 8305677 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggcggggtccTTTTGCGTTACTCCTTCCTGCCGCTCTGCTGTTTCAGAaactgaagaaagaaagaatgaaagagagagacaaccccctcccctcttttgttgttgttgttgttgttaatccATCTCCTTGTCGAGGATTGAGTGACCCGGCACACAATGGCCGTCTAGGAGAGACGCCCGCGGAATGCAAAGCAACCCGGGACCTTGGAGcttgaaagagagaaaggaaggaggaaagaaagaaagaatgagaaaaagcagaaagaacACAGAAGACCTGCCCTGTAGAGAGTGAGAGTTAGCACTGAAGCAGCTGTGTCTTTAACATAGACGAACAACAACCACAGTCGGAGCAttataaattgtgtgtgtgtgtttgctcaCTCGCTCTGTGGCtagttgctgtgtgtgtgtgtgtgtctgtgtttgctcGCTCAGTCAGTCACAGTcctccatgtgtgtgtgtttactcgTTCGCTCGCTCTGTGGCTGGTCTccgagtgtgagtgtgtgcgtttGCTCACACACTCTGTGGCTGGTCTccgagtgtgagtgtgtgcgtttGCTCACACACTCTATGGCTGGTCTCTATGTGTGCGTTTGCTCATGTCTTAATAAGGATGCCCAGCTCCTCTATCGTCCAGTCAGGGCAGGCCCGAGGTGGTTGCTAGAGATCCCAGCTAGGCCGCACGAGCCCTGGAGAGCCTGCGGGCGGGAGGGTCAGGGCAGGTGAAGTGACCTTAAATTGTACAGAGCGCTGTCTTGACTTGACTGATGCCGTTCATGTTGTACTACACACCCTATATTATATACAAGTATAAAAACAAGATGCGAGTTCTGTGACTTTACTGGTCTGAATCGGAGGACCTCTCTGGCACTGCGGGTGTTATTGATCCCAGGTCTGGTCTGGCCTGCTTTTAGAACGGTTGCCCGTCAGCGTTTGGGGCAGATTGTGGTGCCACATGCAATTTCACAATCCCTTGTGCCACCCCTCCCGGGCGCAGGCGAGAGCCGAGTCTGCTCCTGCTCAGGGCGTCATGTCCCGAGGGGGCCTCTAAAGATGGAGGATAAGGAATACCCAACTGCGGCTGAACAGTAAAGGAGATGGGGGTGCTGACATTTcggaacaaatatataaacatttttgaacAGAGGAGGGGGGTGGCGTCAGTCTGAAAGGAGGTTCGGGAGAGTTGTTGTGTGGTGTGCGTGCCGGAGCCCGGCGCGGCCCTCCTGTCTGTACCTGCGGCTCCTTATCAGCAGACATCAGGCCGTCGGGCAGAATATTCCCACATCCTCCGGCCTTATCTCCCAGCTGCCTGCGGGGGAACACAGGGAGAGGAGagtcataataaataacagagagagagagccagcactcttttaaattcttatttatattttttttttgccccgCTGCGTTCACTTCATCCAAgattcaaaagaaaagaaaaagaattaAGTACAGAAATCTGGCGTGCGGTAGCTTTGCTAGATGGAATGGGGTGTCCTCTCgggtaatgtttttttttttttttttcgtttgttttgtttgctggcGGCACAGAtagccaacaaaaaaaaaagaaagttgtgGAGCCAGAGGAGGCCAGGGATGGGAGACTCCCAAGGCTACTGTGACAGCGTGTTCTGTTAGCACGTGTCGACGGGACTCTGTCAGAGGTGGCCGTGTCCCATGTGCTGCACAGAAAAATGGCTCTGCCGTTCAAAACCACGAGAAACTGGCCAGTTGATAAAAAGTCTGCCAGGCTTTTACTTTCTGTCCTTTGAGTGGACCAGTCTGGTAGTCCACTATTGACTGAAATGCGCAAGCAAATCAAAccttccaaaatatatatatatatatatatatataatctgagtgaatgaagaaaatcaatacattctCTGGATATTCTCCCTCCTCGTCTCTCCTCCTACCTGTGGACGCCCCTTCCCCTGCAGCCACCCCAGCCATTCATCACAGCGTGTTGGGGGAGGGTGGAAAAAGGAACGCTAAATAAGTATAACTAGATTAAACTATGAGGTAAATCTCTGCTGCCCCACCCCCCTACCCCTGTGCTGTGTATCTGAAAAAACTATGTGTACAAATCTGCTGTGAGTGTCCGTGTGTGCCATCACTGTTGCACTGTGTGTAGTAAAGCCATTAATATACAAACATGTTATCCAGGAATATTGTGCAGCATAGTGACCGTGACGATGCCGTTATTATATCGACCCCAGCAGTTAGAACAGTAGCAGTGTGGGAggtgaacagaagaaaacattaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121359 lncRNA upstream 53100 8248111 ~ 8250285 (+) True G97350
TU121356 lncRNA upstream 58398 8242777 ~ 8244987 (+) True G97347
TU121336 lncRNA upstream 101528 8200981 ~ 8201857 (+) False AMCG00015345
TU121334 lncRNA upstream 104912 8197072 ~ 8198473 (+) False AMCG00015345
TU121266 lncRNA upstream 135614 8165577 ~ 8167771 (+) False G97265
TU121380 lncRNA downstream 1903 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA downstream 1903 8307580 ~ 8312199 (+) True AMCG00015359
TU121401 lncRNA downstream 98475 8404152 ~ 8411881 (+) False AMCG00015363
TU121407 lncRNA downstream 171545 8477222 ~ 8480537 (+) True G97383
TU121616 lncRNA downstream 307578 8613255 ~ 8616320 (+) True G97543
AMCG00015358 mRNA upstream 337 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015356 mRNA upstream 9704 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015346 mRNA upstream 39217 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015344 mRNA upstream 78612 8215015 ~ 8224773 (+) True AMCG00015344
AMCG00015345 mRNA upstream 101991 8198321 ~ 8201394 (+) True AMCG00015345
AMCG00015359 mRNA downstream 2341 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015357 mRNA downstream 66789 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015363 mRNA downstream 76992 8382669 ~ 8411044 (+) True AMCG00015363
AMCG00015365 mRNA downstream 122018 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015364 mRNA downstream 127806 8433483 ~ 8443894 (+) True AMCG00015364
TU121378 other upstream 416 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 9055 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 9858 8288970 ~ 8293527 (+) False AMCG00015356
TU121298 other upstream 176928 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 224624 8074181 ~ 8078761 (+) True AMCG00015334
TU121387 other downstream 36816 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other downstream 77020 8382697 ~ 8395409 (+) False AMCG00015363
TU121569 other downstream 223341 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 237647 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 381091 8686768 ~ 8687680 (+) True G97558

Expression Profile