RNA id: AMCG00015363


Basic Information

Item Value
RNA id AMCG00015363
length 2979
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00015363
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8382669 ~ 8411881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcctactcctcctcctcctcctctctccctctccctctccctctccccgaCACGGCTGTACGGCGGCCATGTTCAGTGCTCTTGTTCCGGTATCGACGATCCTATTGAAGTTCTGCTGTGAGATATCCGCCTCGGAGCCGCCGGAGCCGCCAGAGCAAGACGCGGTGATATGTACGTGAACGCCTGGGCTCCCATTGCGACTACCCTCCCCTGCATCTGGCGACGACCTGCCTACGATAATTACCCGGCGCTCTCGGATTCCGTGGACTTTCCGTCTTGTTTTTGGTggatttatttcttattttgtgttggttttaaaAGCTAGGTGTTGTATACGGTGGGCAGCAGCGACGGGCGAAGTGGACCTCGCACGACTGAGAccgtttttgtttatttgctagGTTGTTGTCGGGTGTTAttccccccccctctttcttttttaatagaataagtttagttttgtttttgggggCGGCGGGCGGCGGAGGGAAGGTATATTTAACTTCCCAGCGAGAAGGTCGAGTTCCGCCTGGCCTGGCCTAAAACTCCGAATCCCCGGGCTCGATTTCAAAGCTCGCACCGGGGAACGAGCTCCGCCTCGCCAACCCCCGCTCCAACTGGCACCCCTTTCCTTGTGAATTCGGACAACCTTCCAGGTCTTTCTCTCGGCCCTTTCCACTTCCCTTCCCCACTTGGAGAGGGAGaaagtgagagtgtgagagagagagagagagagagagagaggggtgactGGCTTAGACGTGAGCcaaagttttgtgttttgtatggcGTTTATGTTTTCTACACATGTATTGAAGTGAAGGTTGGAGGAGACATCGCTGGGACTCGCACGCCCCCTCCTCTGCACTCTAATCGCAGGACAGCGGATCTTCAATGAGGAGACAACTTGTTGATATCGTGTGTTTGGATTTGGTCGAAAGCAAATAATCAAGCCGACCTCGTAGTctcacccccctctccctcctcctcctcctcatcctcctttcTCTCCAAGTGGCAGGCTACGATAGCTCAGTACTATGACTTTCTAAAGGGTCCAACAGTTCTGAACACAAACGTTTCCCTGCTGACATGTCTACGCGGCCGCCATTGTCAACGGTGATCGAGCACTCTTCAGCTCAGcactcCACTGGTCACTCGGACAGCTCCAAGCCAGTGGGGCGTCCCAGCATGCCACGCTGCCGGAACTCCCTGGCAACGGCCGCGGACGAGCAGCCACACATCGGCAACTACCGGCTCCTCAAGACCATCGGCAAGGGCAACTTTGCCAAGGTCAAGCTGGCACGGCACGTCCTCACTGGGAAAGagGTGGCCGTGAAGATCATAGACAAGACACAGCTCAACTCCTCTAGTCTACAGAAGCTCTTTCGTGAAGTAAGAATAATGAAGCTTCTGAACCATCCTAATATAGttaAGTTATTTGAAGTGATAGAGACGGAGAAGACTCTGTATTTAGTAATGGAATATGCTAGTGGAGgtgagGTGTTTGATTATCTCGTTGCTCACGGGCGGATGAAAGAGAAGGAGGCTCGGGCCAAATTCCGACAGATTGTGTCAGCAGTGCAGTACTGTCACCAGAATAACGAGTTCACAATGGGCAACAAGCTAGACACGTTCTGTGGCAGCCCCCCCTACGCCGCCCCCGAGCTCTTCCAGGGCAAGAAGTACGACGGCCCCGAGGTGGACGTATGGAGCCTGGGGGTCATCCTTTACACGCTGGAGCTGAGGGAGAGGGTCCTGCGGGGGAAGTACAGAATCCCCTTCTACATGTCCACGGACTGCGAGAACCTGCTGAAAAAATTCCTCATCCTCAACCCAGCCAAGAGGGGCAGCCTGGAGATGGGATACACCCCTGAGGAGATCCAGGACTCCCTGGTCAATCAGAAATACAATGAGGTGATGGCAACGTACCTGCTGCTGGACTATAAAACCTCAGAGcTTGAAGATGGGATGGTTTTGATAAAACCACGCCCAGGAAGTGACCTCACAAACAGCAACGTCCAATCCCCTCCTCACAAGGTACAGCGCAGCGTCTCGTCCAATCCGAAGCCTCGGAGACCGACTGACCAAGgCACCTCTAATACCTCCTCCAAGCGGGGGGGCTCAGACGGCAAGCACCACTCCGAAGAGGGGGGGCGCAAGGGCTCGGGCAGCTCAGCCAAGGTGCCCGCCAGCCCCCTCACCCCCGCCGACCGCAAGAAgggcacccccaccccctccacaCCTGAACACTCCGGGGTCTCGGGCCTCCACCGCATCCGCCGCCGCCGtgctgtcctcctcctcctcctctacctCCTCCCGCGTTCGCCACCAGAAATCCCTGTCCACCTCCAACCACCCCAGCCCCCCCCAGCACCCCCACAGCGCCCGGCCCAGGCAACGCACAACATTAGCAGCTCTGTGGCGACGGACCGTACCAACTTCCCACGGGGGGTGCTCAGTCGCAGCACTTTCCACGCCGGCCAGCAGAGGGCAACGAGAGACCAGCACAGCCCGTACAATGGGCCCCccgcctccccctccctctcccacgGCAACAGCCAGGCGCGGCGTGGGGGGGCCAGTGGCATCTTCAGCAAGTTCACCTCCAAGTTTGTGCGCAGgAACCCATACGAGAGCGACAGCAGAGAGCTGGCTGAGGGGAGCAGaCCCATGCTGAGCGTTAGCGGCAGTGGCAACAACAGTGACAACCCCACCAACACCAACAACCCGCCGAAGGAGGGCAAGGAGGAGAACTGCGTCCCCACAGTGCCCGGGCACCCCGCGCCCACGCCGCCCGGGACGGGCCTGGCGCTGAAGGACCCCAAGCCGCGCTCACTGCGCTTCACCTGGAGCATGAAGACCACCAGCTCTATGGAGCCCGGCGAGATGATGCGCGAGATCCGCAAGGTGCTGGACGCCAATGGCTGCGAGTACGAAGCCCGCGAGCGCTTCCTGCTGCTagattatttttaa

Function

GO:

id name namespace
GO:0043167 ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121380 lncRNA upstream 70470 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 70470 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 76992 8303385 ~ 8305677 (+) True AMCG00015362
TU121359 lncRNA upstream 132384 8248111 ~ 8250285 (+) True G97350
TU121356 lncRNA upstream 137682 8242777 ~ 8244987 (+) True G97347
TU121407 lncRNA downstream 66178 8477222 ~ 8480537 (+) True G97383
TU121616 lncRNA downstream 202211 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 213045 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 213045 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 281384 8692428 ~ 8692642 (+) True G97560
AMCG00015357 mRNA upstream 1492 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015359 mRNA upstream 70492 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015362 mRNA upstream 78552 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015358 mRNA upstream 79621 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015356 mRNA upstream 88988 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015365 mRNA downstream 16651 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015364 mRNA downstream 22439 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015369 mRNA downstream 103669 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015368 mRNA downstream 119099 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015370 mRNA downstream 141754 8552798 ~ 8572065 (+) True AMCG00015370
TU121378 other upstream 79700 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 88339 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 89142 8288970 ~ 8293527 (+) False AMCG00015356
TU121298 other upstream 256212 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 303908 8074181 ~ 8078761 (+) True AMCG00015334
TU121569 other downstream 117974 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 132280 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 275724 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 417692 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 466248 8877292 ~ 8883953 (+) False AMCG00015390

Expression Profile