RNA id: TU121400


Basic Information

Item Value
RNA id TU121400
length 1836
RNA type TUCP
GC content 0.54
exon number 8
gene id AMCG00015363
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8382669 ~ 8411881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctccctctccctctccccgaCACGGCTGTACGGCGGCCATGTTCAGTGCTCTTGTTCCGGTATCGACGATCCTATTGAAGTTCTGCTGTGAGATATCCGCCTCGGAGCCGCCGGAGCCGCCAGAGCAAGACGCGGTGATATGTACGTGAACGCCTGGGCTCCCATTGCGACTACCCTCCCCTGCATCTGGCGACGACCTGCCTACGATAATTACCCGGCGCTCTCGGATTCCGTGGACTTTCCGTCTTGTTTTTGGTggatttatttcttattttgtgttggttttaaaAGCTAGGTGTTGTATACGGTGGGCAGCAGCGACGGGCGAAGTGGACCTCGCACGACTGAGAccgtttttgtttatttgctagGTTGTTGTCGGGTGTTAttccccccccctctttcttttttaatagaataagtttagttttgtttttgggggCGGCGGGCGGCGGAGGGAAGGTATATTTAACTTCCCAGCGAGAAGGTCGAGTTCCGCCTGGCCTGGCCTAAAACTCCGAATCCCCGGGCTCGATTTCAAAGCTCGCACCGGGGAACGAGCTCCGCCTCGCCAACCCCCGCTCCAACTGGCACCCCTTTCCTTGTGAATTCGGACAACCTTCCAGGTCTTTCTCTCGGCCCTTTCCACTTCCCTTCCCCACTTGGAGAGGGAGaaagtgagagtgtgagagagagagagagagagagagagaggggtgactGGCTTAGACGTGAGCcaaagttttgtgttttgtatggcGTTTATGTTTTCTACACATGTATTGAAGTGAAGGTTGGAGGAGACATCGCTGGGACTCGCACGCCCCCTCCTCTGCACTCTAATCGCAGGACAGCGGATCTTCAATGAGGAGACAACTTGTTGATATCGTGTGTTTGGATTTGGTCGAAAGCAAATAATCAAGCCGACCTCGTAGTctcacccccctctccctcctcctcctcctcatcctcctttcTCTCCAAGTGGCAGGCTACGATAGCTCAGTACTATGACTTTCTAAAGGGTCCAACAGTTCTGAACACAAACGTTTCCCTGCTGACATGTCTACGCGGCCGCCATTGTCAACGGTGATCGAGCACTCTTCAGCTCAGcactcCACTGGTCACTCGGACAGCTCCAAGCCAGTGGGGCGTCCCAGCATGCCACGCTGCCGGAACTCCCTGGCAACGGCCGCGGACGAGCAGCCACACATCGGCAACTACCGGCTCCTCAAGACCATCGGCAAGGGCAACTTTGCCAAGGTCAAGCTGGCACGGCACGTCCTCACTGGGAAAGagGTGGCCGTGAAGATCATAGACAAGACACAGCTCAACTCCTCTAGTCTACAGAAGCTCTTTCGTGAAGTAAGAATAATGAAGCTTCTGAACCATCCTAATATAGttaAGTTATTTGAAGTGATAGAGACGGAGAAGACTCTGTATTTAGTAATGGAATATGCTAGTGGAGgtgagGTGTTTGATTATCTCGTTGCTCACGGGCGGATGAAAGAGAAGGAGGCTCGGGCCAAATTCCGACAGATTGTGTCAGCAGTGCAGTACTGTCACCAGAAGTGCATTGTACACAGAGATCTCAAGGCTGAGAACCTGCTGCTGGACGCGGACATGAACATCAAGATCGCCGACTTCGGCTTCAGTAACGAGTTCACAATGGGCAACAAGCTAGACACGTTCTGTGGCAGCCCCCCCTACGCCGCCCCCGAGCTCTTCCAGGGCAAGAAGTACGACGGCCCCGAGGTGGACGTATGGAGCCTGGGGGTCATCCTTTACACGCTGGTCAGCGGCTCGCTGCCCTTCGACGGACAGAACCTCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121380 lncRNA upstream 70498 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 70498 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 77020 8303385 ~ 8305677 (+) True AMCG00015362
TU121359 lncRNA upstream 132412 8248111 ~ 8250285 (+) True G97350
TU121356 lncRNA upstream 137710 8242777 ~ 8244987 (+) True G97347
TU121401 lncRNA downstream 8743 8404152 ~ 8411881 (+) False AMCG00015363
TU121407 lncRNA downstream 81813 8477222 ~ 8480537 (+) True G97383
TU121616 lncRNA downstream 217846 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 228680 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 228680 8624089 ~ 8624687 (+) False G97547
AMCG00015357 mRNA upstream 1520 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015359 mRNA upstream 70520 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015362 mRNA upstream 78580 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015358 mRNA upstream 79649 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015356 mRNA upstream 89016 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015365 mRNA downstream 32286 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015364 mRNA downstream 38074 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015369 mRNA downstream 119304 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015368 mRNA downstream 134734 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015370 mRNA downstream 157389 8552798 ~ 8572065 (+) True AMCG00015370
TU121378 other upstream 79728 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 88367 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 89170 8288970 ~ 8293527 (+) False AMCG00015356
TU121298 other upstream 256240 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 303936 8074181 ~ 8078761 (+) True AMCG00015334
TU121569 other downstream 133609 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 147915 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 291359 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 433327 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 481883 8877292 ~ 8883953 (+) False AMCG00015390

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038686 False 2271 mRNA 0.53 18 NC_007132.7 27204765 ~ 27272657 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_03412397_03437333.mRNA True 2727 mRNA 0.51 17 CI01000006 3412397 ~ 3437710 (+)