RNA id: TU121387



Basic Information


Item Value
RNA id TU121387
length 941
RNA type TUCP
GC content 0.53
exon number 9
gene id AMCG00015365
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8342493 ~ 8433092 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCAAGCACCCCCATTGCAAACTCAACCCGACTGTAGTAGCTCCACAGCTGTGCATCGCCTTGAGAAGCGGCCTTACAATTAATAGCTTTAGGAGATTTCTTGAAACTCACCTTTTTTTAAGCTTTAAGGATCTCTCTTtagctgcatttaaaaaaaaaaaaaaaaaNAAACTCGAGCGagtgagtgaaaaaaaaaaagtttgctcgCGCCGTTCGCGCTGTGTTCCGGCATGGGGAGGAAGTCAAACAAGGCGAAGGAGAAGAAACAGAGGAGGCTGGAGGAGAGGGCCGCCATGGACGCCGTGTGCGCCAAGGTGGAGTCGGCCAATAAGCTGGAGGATCCACTGGCTGCTTTCCCAGTGTTCAAGAAATACGACCGGaatggGTTGAACCTTGCAATTGAGTGCCAGCGGGTGGCAGCACTGAGCCCTGACACACTGGAGTGGGCGTACGACCTGACGCGCAACAACATGCAGGCACTCTATGAACAGAGTGAGTGGGGGTGGAAGGAGCGGGAGAAGAGGGAGGAGCTTCGAGATGAAAGGGCGTGGTATCTCCTGGCCAGGGATGGAGGAGGCGGGGCATCTGGAGgatcagccacacccattgcatTCTCTCACTTTCGGTTCGACGTGGAGTGCGGGGAGGAAGTGCTGTACTGtTATGAGGTTCAGTTGGAGAGCCGTGTTCGCAGGAAAGGTCTGGGCAAATTCCTCATTCAGATCCTGCAGCTCATTGCCAACAGtacACAGATGAAGAAGGTGATGTTAACAGTATTCAAACACAATCATGGCGCCTACCAGTTCTTCAGGGAGTCCTTACAGTTTGAGATTGACGAGTCCTCTCCCAGCGTGTCTGGTTGCTGTAGTGATGACTGCTCCTATGAGATCCTGAGCCGGAGGACCAAGTTTGGCGAGGGGGGGCCGCACGCGCACGGGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU121380 lncRNA upstream 30294 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 30294 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 36816 8303385 ~ 8305677 (+) True AMCG00015362
TU121359 lncRNA upstream 92208 8248111 ~ 8250285 (+) True G97350
TU121356 lncRNA upstream 97506 8242777 ~ 8244987 (+) True G97347
TU121407 lncRNA downstream 45102 8477222 ~ 8480537 (+) True G97383
TU121616 lncRNA downstream 181135 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 191969 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 191969 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 260308 8692428 ~ 8692642 (+) True G97560
AMCG00015359 mRNA upstream 30316 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015362 mRNA upstream 38376 8303569 ~ 8304117 (+) False AMCG00015362
AMCG00015358 mRNA upstream 39445 8295824 ~ 8303048 (+) False AMCG00015358
AMCG00015356 mRNA upstream 48812 8289015 ~ 8293681 (+) True AMCG00015356
AMCG00015346 mRNA upstream 78325 8259173 ~ 8264168 (+) True AMCG00015346
AMCG00015364 mRNA downstream 1363 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015369 mRNA downstream 82593 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015368 mRNA downstream 98023 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015370 mRNA downstream 120678 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015378 mRNA downstream 159796 8591916 ~ 8596613 (+) True AMCG00015378
TU121378 other upstream 39524 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 48163 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 48966 8288970 ~ 8293527 (+) False AMCG00015356
TU121298 other upstream 216036 8124608 ~ 8126457 (+) True AMCG00015343
TU121271 other upstream 263732 8074181 ~ 8078761 (+) True AMCG00015334
TU121569 other downstream 96898 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 111204 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 254648 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 396616 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 445172 8877292 ~ 8883953 (+) False AMCG00015390

Expression Profile