RNA id: TU121569


Basic Information

Item Value
RNA id TU121569
length 2457
RNA type TUCP
GC content 0.47
exon number 3
gene id AMCG00015368
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8529018 ~ 8533404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGGTGGGAGGGCTTGGCGGGATCAGGAAGTGCAGTTGGAATCCGAGAGCGCAGGCTGTGGAGAAACTGAAAGGAGCTCACTTTCAATAAGAGGccaggagagagacaggcacccagcagcagcagcagccagtgAGTCCGCCACCATGTCGTCCACCTCTCAGAAGCACAAGGAGTTTGTGGCCGAGCCCATGGGCGAGAAGCCGGTGATGGCCCTGGCCGGGATCGGGGAAGTTCTGGGCAAACGCCTGGAGGAGAAGGGCTTTGATAaggCATATGTGGTCCTGGGTCAGTTCCTGGTTCTGAAGAAGGACGAGGAGCTGTTCCGCGACTGGCTGAAGGAAACGTGCGGCGCCAACTCCAAACAGCAGAACGACTGCTACAGCTGTCTGCGCGAGTGGTGTGATTCCTTCCTGTAGTGCCGCCCCACTCCACCGAGGGCGTCGCTTCTTCTCTGCCTGCTCTTCTCTCAcggtttttctttttgtgtttgtgtgttttttaagttgagtttttctttgctttgttggtataggtttatttttatttccatacaattcaaaatatattttgggatGATTCGAATCCCGGTTCGAATGCCGCTCCGGCAAACCGTTGGGAGAGCGATGGAGCGAAGTCCGAGAAAATTCATATCAGATCCGAGGATGGAAAAGCAAAGccggggggggggttgtttgctttgaaaccaTGGAGAGCTTCAGTGCTGGCCGGtgcattgtatgtgtgtgtttgcactcACTCACACGTGCGTTTTGAGGGTTTGGATTTAATCGCGGTTCTCAATTGAGTTCATGAattgttggtttaattaagaACCCACTGTGAGTAACTTGTcagaaacacataaacacacacattttatttaccaGATCTGTGGTTCTTAAGGGTTATTTCATGTTTCCAATGATGACTGAGCTCCGAATGCCACACAGCATTGCTCTCCAGGTCGAGATTTTGGGTAAAcctgactttttaaatgttttttaaaagtaaatcacCACTCGGCCCCCCGGGCCCATACCTCAGAGTCAGCCGCTGAAATACTGACAATAGTTTTTAtaccttaaaatgaaaaataaaattaaaaactgactGGTTTAATTTGGTTGATTTCAAATGGGGGggttattaataaaacaaacaaaaaaatgtaatgatgcttttaaactttattttaacgTGTTTATCCAGGAGGCGATTTAACCAGTGACGAAAGGGAGTGGGGAGGGTTGTGAATACAATCGGGGATGGCCCGGATCTCTGCACCCAGTTTTTGGGAGGCTCCAGTtttaagggggaaaaacaatGCCAAAAGGTTACAGGCCTTGAAGGCTTTACTTTGCTACTGTATGTGCCAAGAGTATCTCGGTGCAATGCATTCAACTCTCTCCAGTAGGAgggagttatttttattattactattctcTTTCATTCTGGGGGGGTTCTGAGGAGTCTCCCCACTCCTTCCGGAACTCTTGACGCCTCCCGACATTCTGACGGCCGCAGCGTCCGTGCCTCCCGTCAGGCTGCTGAACGCACTGTAAACGCTTGAGGGGGAAGAGAAGAGAGTCCGGGCACAAGCTCAGTTGGGACCCCGTCTCTCTCGGCAACAGCtttgggttttttatttttatcggGTTTATGTGTTTCAGCCaatatcatttttatgtttttaagtttatttctTGTGGACAAAGAGAGGGAAAGTGGGAGAGGAGCTCAGCAGGGCAGGGTTGGTTTCTGGCGATGCAAAATCTGGCTTTGGGAAACAAACATGAAAcgcaaaggaaagaaaaggaaaaaaaaatcaaaggagagagagagagagatgcatagAGAGGTGCTAGTTCGGTGGGCTGGTGTCCTGCCTGGCTCTGCGGTCGCTGCCTTGTGCTGAATTCGAGGTCCAGCTGGATTCAGTCTGTAGACCGTGGGGGTGGTTGCAACTCTGCCACCGATTTACCAAAATATTGGTATCTgtcgtttttttcttctttttctgacCTGTAAAATGTGATGGCAGGTTTGTCTGCAAGCTGCCCCAGCCTGTGGGGATTATGTTTAACCTTGAGTTTCAAAATGGAgctagttattttatttgttttgggtgttgaatttgttattttggtcattttattttttttaaataaaatttttAAAGTCAAATATCATCCCTGTTTGGAGGAGTTTCTTTATTGATTCACAAAACCTTTCAAAACTACAGGAGGACTGAAGACGACACACGTGTGGGTGGGGGTCATGTGTCTTTTTGTGTCTGTGCAGCTGTTTGTGTGtcgtatgtctgtgtgtgtgaaatacagGGAATCAAGCACTAAATTGCATTCTGCTCCCAGGTTTACAATCTCTGTTGCTGTTGTGAATGACCTGGCATCCCCGTCTCTGTCCGCCTTCCTGTCTGGCTCAGTGAGACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121407 lncRNA upstream 48481 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 117137 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 216819 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 216819 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 223341 8303385 ~ 8305677 (+) True AMCG00015362
TU121616 lncRNA downstream 79851 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 90685 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 90685 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 159024 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 185837 8719241 ~ 8719562 (+) True G97588
AMCG00015369 mRNA upstream 4459 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015364 mRNA upstream 85124 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015365 mRNA upstream 95926 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015363 mRNA upstream 117974 8382669 ~ 8411044 (+) True AMCG00015363
AMCG00015357 mRNA upstream 147841 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015370 mRNA downstream 19394 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015378 mRNA downstream 58512 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015377 mRNA downstream 75446 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015376 mRNA downstream 94367 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015381 mRNA downstream 196570 8729974 ~ 8731761 (+) True AMCG00015381
TU121387 other upstream 96898 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 133609 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 226049 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 234688 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 235491 8288970 ~ 8293527 (+) False AMCG00015356
TU121580 other downstream 9920 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 153364 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 295332 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 343888 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 418389 8951793 ~ 8953675 (+) True AMCG00015396

Expression Profile