RNA id: AMCG00015369


Basic Information

Item Value
RNA id AMCG00015369
length 3423
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00015369
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8514713 ~ 8524559 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAGCGCTTCCGTGTCGTGTTTCTTTGCGTTGTGTGAACATCGTAGTGGACGGGAGAGATTTGAACGTTGTTTTGAAGTTTATTTATATACGTCTTCATTTGGAAGTTAAAACTCCAGATACATTAAAGGAAACGTCGAGGAAATAATAGTTAATGATAAGAAACTTATGAACTGCGACCATAACtgacaaagagaaacaaacGGAGACTCGGGCCGGAGcggtttgttattatttgtggtTATTACGGTGTGTTCACTCTTCACACCTCAATGCGCCGCCTAACCCGGCCTTAGCGCACATCCGTGTCCCTGGCGTTTGATTTGCCCGTTATTTTTGATCAAGGCACCCCCCCGATTTCCACCGGACCCGGCCGATTCAAGATGGGCTCCTCGAAGAAGCACAAGGAGAAGGACCGGGAGAGGGACGCCGAGGAGCGCCACCGGGAGCACAAGAAACACAAGCACAAGGACCGGGAGCGGGACCGCGAAAGGGACGGGAATAAGGACCGGGAAAAGAGGAAGCGCTCCCGGTCCAGGGAGCGAGGCGGGGGCGGCCGGGGCTCGGAGAGAGAAGGCCGGGGCAAGGGGGAGCGGAGCGGCGTGGGGGAGCCGAGGGTGAAGAAGGAGAAGCCCGACTCCAGCTACGAGGAGGCAAACTGAGGGCCAAGTTAGGCCTGAAGCCCCTGGAAGTGAACCAGACCAAGAAAGAGCTGGGCACAAAGGAGGACCCCAAGGTTGCTGAGACGATTAACCCTGTCCACCTGAAGCAGCAGGCGGAGATGCGCGAGAAACTGGCGGCACTGAAGGAGAAGAGGCTGCTGAACCAGAAACTGGGgaaGGTGAAGACGCTGGCGGAGGAGGAGTCCTGGCTGGACGACACGGCCGCCTGGGTGGAGAGGAGCCGCACGCTGGCCAAGGAGAAGGAGCTGGCCGAGAAAAGgGCGAAGCTACTGGAGGAGATGGACCAAGAGTTTGGTGTGAGCAACCTGGTGGAGGAGGAGTTCGGCCAGGCCAAGAAGGAGAGTTATGGCGCGGGGGATCTGCAGGGCCTGACTGTGCAGCACAAGGTGGACTCCTTCTCCGAGGGCCAGACAGTCATCCTCACACTGAAGGACAAGGGggtgctggaggaggaggaggacgtgCTGGTGAATGTGGGCCTGCAGGACAAGGAGCGCGCCCAGAAGAACGTGGAGCTGCGCAAGAAGAAGCCCGACTACAAGCCCtacgaggaggaggagagcgtGGACGACATGGCCGAGCTGAAGCCGCGCTCGGTGCTGTCCAAGTACGACGAGGAAATCGATGGAGAGAAGAAGGGCGGCTTCCGGCTTAGCGCAGGGGGGCAGGGTGGGGCGGCCTGGGAGCGGGAGCGGGAGCTGCAGGAGGTCCGGGAAGCGCTGCGCAGCCAGGCCGTCAGTCTGGATGGGCCGGGGCCCCGCCTCGCCTCCGAGTACTACACCCCCGACGAGATGGTGACCTTCAACAAGACGAAGCGGCGAGTGAGGAAGATCAGGAAGAAGGAGAGGCCCCTGAAGCCAGAGGAGCTGCTCCCCCTGGTGGACAAGACAGCAGACCACGACCACGGCTCCCGtgtgagGGGGCGTGGGCGGAAGCAGGAGGGAGGGGACAGCGAGGGAGGGGATGAGGAAGGGAGCGCGGCCTCCCCGAGGAAGAGGGATTCAGAGCAGCCACAGCTGTCAGACGACAGGAGAGTGGAGAACATGGACATCAGTGATGAGGACGAGATTGAGACCCCAGGTCCCACTCTGCTGGAGGAGGACGAGGCTGAGCTGGAGCTGCAGAAACAGCTGGAGAAGCAGAGGAGACTGAGGCAGAAGCAGCTGCTCAAAGACTCTGCGGAGAAGGTGGTGGAGAGAGTGCAGCAGCTAGAGGCGCCACCCCAGggcatggaggaggaggaagggggcgGCGGTGCtgagggagtgggggggcgGAGCAACATAGTTTTCAACGCCACCTCGGAGTTCTGCCGGGCGCTGGGCGACATCCCCACCTACGGGCTCTCCGGCAACAGGGAGGACCAGTCTGAAGTCATGGATTTCGAGCGGGATGAGGAACGGTCAGGTGGAGGGGGCTCGGACTCGGAGCTGGACGAGAACGTGGGTTGGAGCATGGTCAACCTGGACGAGGAGCAGAAACAGCCCGACttctcGACAGCCTCCACCACTATCCTGGATGAGGAGCCCATAGTCAATTCAGGCCTGGCTGCGGCCCTCCTGCTGTGCAAGAACAAGGGGCTGCTGGACACGCAGATGCAGAAGGTGGCGCGGGTGCGAGCACCTAAAGGAGCCCTGCCCAATGCCATGTACTGCATCGAGGACAAGATgaCGATCGATGACAAGTACAGCCGGCGGGAGGAGTACCGTGGCTTCACGCAGGACTTCAAGGAGAAGGAAAGCTACCGGCCCGACGTCAAGATCGAGTACGTGGACGACACGGGCCGCAAGCTCACGCCCAAGGAGGCCTTCAGACAGCTGTCCCACCGTTTCCATGGCAAAGGCTCTGGAAAGATGAAGACTGAGCGACGGATGAagaagctggaggaggaggcgctgttGAAGAAGATGAGCTCCAGTGACACCCCCCTGGGCACCGTGGCGCTGCTGCAGGAGAAGCAGAAGTCACAGAAGACACCCTACATCGTCCTGAGTGGGAGTGGGAAGAGCATGAATGCAAATACCATTACGAAGTAGACCAGCTGGGTGCATCTCCCCCCCAGAAGACAATCCCTCTCTGTCTGCTGACCAGAGGAGAGAGATGGTGGAGGTGCAAGAGGAGAGGACAGACCTACATCCCCAGCAGCAGCGCACATGGTTTTTCGTCTGTAAAGACTACAAACCAAAAAAGACTCTTCGTGGTCCCCTGTATCATTCCTGAAATCAAGATTGCCCCTCTTCCCTGGCCCCCATTTATCATCGATCAATAATAGTGTCTGTAATCGGTCACCTGTCCAGGGCAGTTCCCAGACAGCTGTCTGCGTGACTGGCAGAGTGCGATGTGTGAATAAATATACTTCTGGCTGTGGGGGGCCTTACTGCTGTTTCAAGACCTTGAGGGGGAGTTATAGTATGGTATTTGAACACCCCAGTTACCagttagtaaaaaaaaaaaaaaaaaaaaatgggaaaaatgcTCATCACTTATATAGCAATTACAGGAGGAGGGGGTTTGCCTGTGTACATAcgtttattaatgttattttaagtttgcttttttgggggggtgggtttgtttgtggggaaaaacaaaccacacaaaaccGGGACTGTAAGCGGGGTCAAGTCAGACCTGCCTGGcgttttaaataaacatcaagATTTGAAAGAGCTCTGTGTGGTGAAAGGTCATCTGTCTTGTACAGGGAATGCAGAGTTTTATAAACTGGAATTTGCTCTTA

Function

GO: NA

KEGG:

id description
K11984 SART1, HAF, SNU66; U4/U6.U5 tri-snRNP-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121407 lncRNA upstream 34176 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 102832 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 202514 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 202514 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 209036 8303385 ~ 8305677 (+) True AMCG00015362
TU121616 lncRNA downstream 88696 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 99530 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 99530 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 167869 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 194682 8719241 ~ 8719562 (+) True G97588
AMCG00015364 mRNA upstream 70819 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015365 mRNA upstream 81621 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015363 mRNA upstream 103669 8382669 ~ 8411044 (+) True AMCG00015363
AMCG00015357 mRNA upstream 133536 8372466 ~ 8381177 (+) True AMCG00015357
AMCG00015359 mRNA upstream 202536 8308018 ~ 8312177 (+) False AMCG00015359
AMCG00015368 mRNA downstream 5584 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015370 mRNA downstream 28239 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015378 mRNA downstream 67357 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015377 mRNA downstream 84291 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015376 mRNA downstream 103212 8627771 ~ 8655109 (+) True AMCG00015376
TU121387 other upstream 82593 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 119304 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 211744 8295087 ~ 8302969 (+) True AMCG00015358
TU121352 other upstream 220383 8233424 ~ 8294330 (+) True G97343
TU121351 other upstream 221186 8288970 ~ 8293527 (+) False AMCG00015356
TU121569 other downstream 4459 8529018 ~ 8533404 (+) True AMCG00015368
TU121580 other downstream 18765 8543324 ~ 8544782 (+) True G97513
TU121633 other downstream 162209 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 304177 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 352733 8877292 ~ 8883953 (+) False AMCG00015390

Expression Profile