RNA id: AMCG00015376


Basic Information

Item Value
RNA id AMCG00015376
length 5511
RNA type mRNA
GC content 0.52
exon number 29
gene id AMCG00015376
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8627771 ~ 8655109 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagaggagaaggaggagaaagggagaggggtgTAGTAGGACAGTGAACACACACTGTCCCTTTAAGAAGAACTGCTCTCCAATGCGCTGATAAAACACGCCTTCTTGCAGCCTGTTGAGTAAGTCCGATAGACACCGATAATTACACTTCTACACAGAAGAcgaggaaagagggagggaaaaaagaaaaagaaagaagaaaaagtcgAGTggttcgctctctctctccctccctcttcctcctcctcctctctctttctccgaGAAACACGAGAGAAGCAAGCTAAAGATCCTGGcaccggagagagagagagagagagagacgttaAAACGAGAAGAAGAGGCGCAACTCTcagggaaggaggaggaggaggaggagggacaaCGAGGAATTCGGTTTCATCGGGGAGTCACAACTGGAACTTTTGATCTGTAAACACCCGTCTAATTAAACCCCACCAATCAGAGAGACTGGCTGTGTGTCCAAGTggggaccccccccccccacacactcactcactcactgaccAACCCGACCCCACCGGACCGGCCATCGGAACCGCGCCACAGGGGGAAGGGAGCCGGTGAGGCGGCGCGGATCGGGATTCCCAGCCCGCCGGGAGTGCCGGGATGGCCGGGGCTCGTCCCGGGGTGCATGCTCTGCAGCTCAAACCCGTCTCGGTCCACGAAGCGCTGAAGAAAGGGGGCAAGTTTGTGAAATGGGACGAGgATGGCAGTGCCCATTCCCTGGTCACAATGAAGGTGGACCCAGATGGATTCTTCCTGTACTGGACTGGCTCCAACATGGAGGTGGAGCTGCTGGATATCAGCCTAATCCGGGACACCAGGACCGGAAAATATGCCAGGCTACCAAAGGACCCCAAGGTGAGAGATATGCTCGGGTTGCCCCCAGTAGAGAAGCCAGGAGAGGGCAAAGGTCAACAGGGAGACAAGTTGGCAGAGGGCAAGAATCAACAGGCTGACAAGTCCGTGGAGGTCAAGGGTCAGCAGGCGGAGAAGTCGGCGGAGAACCTGGTGACGGTGGTGTACGGCACTGACCTGGTCAACATCAACTTCCTCAACTTGCAGGCCATGGAGAAGGACTCTGCCAAGCTGTGGACGCAGGAGCTGTTTAAACTTGCCACAGACGTGCTGGCCCACAATTCCTCTCGCAACACCTTCCTATTCAAAGTgTACATCAAGTTAAAACTGCAGGTGAACCAGGACAACAAGATACCAGTGAagaatatTCTGAAGATGTTCTCGGATAAAAAGAGGGTGGAGACTGCTTTGGAGCTATGTGGTCTGTCAGCCAATCGGGGGAAGCCGTTCCTGTTCCTGGACCAGCTGACGGATTACATCAACAAGAAGCAGCGCGACTCGCGGCTCAACGAGGTGCTCCGGTACCTGGGGGGTGAGGAGAACAGCATCGTGCCCCCGGAGAGACTGGACATTATCGATGACATGTGCCAGCCCCTCAGCCACTACTTCATCAACTCCTCCCACAACACCTACCTCACAGCCGGTCAGCTGACTGGACTGTCCACAGTGGAGATGTACAGACAGGTGCTGCTGACAGGCTGTCGCTGCATCGAGCTGGACTGCTGGAAGGGGCAGGGCAAGGACGAGGAGCCAATCATCACTCACGGCTTCACTATGACGACGGATATTCCCTTCAAGATGGCAGAGTACTGTCGCTCTATCTTTGGGGATGCCCTTCTCATCGAGCCCCTGGAGAAATATCCTCTGGAACCAGGTCAGATGCTGCCCAGCCCCCAGGAGCTGCTGGGTAAGATCCTGATcaagaacaagaagaaacaCCGGCACGGTACAGTCAGCGTCCGGCGCCGGGTGTCCGAGCAAAACTCCCTACCCCTCGACACCTCCGTAGTCCAGGACCAGCCCACGCCCCCCCCAGACCGAGAGGCGGAgtcagaggaagaggaggaggaagaacaGGGGGACCCCAAAAAACCCACCTCTGATGAGgGCACGGCCAGCAGTGAGGTCAATGCCACTGAGGAGATGTCCAACCTGGTGAACTACATCGAGCCAGTCAAGTTCAAGTCCTTTGAGGTGGCCAACAAGAGGAACAAGTTCTTTGAGATGTCCTCCTTGGTGGAGACTAAAGGCATGGACATACTGAAGGGAGCGCCCACAGAGTTTGTGGAGTATCCTTTACTGCTGGACGCATCCATTTTGTACAATAAGAAGCAGCTGAGCCGTATTTACCCCAAGGGCACACGGGTCGACTCCTCCAACTACATGCCACAGATCTTCTGGAATGTGGGCTGTCAGATGGTGGCACTCAACTTCCAAACACcggACTTGCCCATGCAGTTGAATCTGGGTATATTTGAGTACAACGGGCGCAGTGGCTACCTGCTCAAACCCGAGTTCATGCGCAGGATGGACAAACACTTTGACCCCTTCACCGAGGACATCGTGGATGGCATCGTGGCCAACACTGTCAAGATCAGGaTCATCTCAGGCCAGTTTCTGACTGATAAGAAGGTGGGGGTGTATGTGGAGGTGGACATGTTTGGCCTCCCTGTGGACACAAAGCGAAAGTACCGGACGAAGACGTCCAACAACAACTCCATGGACCCTGTGTGGGACGAGGACCTCTACGTCTTCAATAAGgtgGTTCTGCCTAGTCTGGCCTCCCTGCGAGTTGCTGTGTTTGAGGAGAATGGGAAGTTCATCGGCCACCGGATCCTGCCTGTGGGAGCCATCCGGCCCGGTTACCATTACATCAACCTGAAGAATGAGCTGAACCAGCCCCTGCTGCTGTCCTCTCTGCTAGTGTACACTGAGGCCCAGGACTACATCCCCAACGAGCACCAGGAGTACGCGGACGCCCTGACGAACCCCATCTGGCATATCAGCACGCTGGACCAGCGAGAGACACAGCTGGCCGTGCTCATACAGGGCAGCGAGGGGAAGCCAGTGCAGGTGCGTGAGGACCGGCGGAGCAGCGAGCAGACGGAGCCGATCTGTCCCCCCTTGGACAGGAAGGTCAGTCTGGTGTGGCAGGGCCCACCAGCACCCCCTGCTGACACTCCTCCCAGAGACGCCCCGCCTCCCAGCATAGCACTGAAAGAGCAGAAAGAGGATCTGATTGCCACTGTGTTAGCAGACATCAAGGTGCAGGCGCTGGATGATCTGCGGCAGGAGAAGTCCTTccagaagctggagaagaagcACAACaaggagctgcaggagctgcGCAAGAAGCACCTGCGCAGACTGTGGCAGCTGAGCAAGCAGCAGCGAACCAAGAGCAGCCAGCTGCAAAGCGACAGCCTGCGCCGCCGCAGCCAGATCGAGAAGAGCCTGAAGCGCAGCCTAAAAAAGaaCGTGGGCCCCGAGGTCGTGCAGAAGCAGATGCAGGAGCTGTCAGGcgaggaggagcagcagcagcggcagcgGGAGCAGCTGCAGAGCGTGGAGCTGGTGGAGCTGCTGGAGCTGCGGAGGACACAACACAGcctggagagacagaggaaaaTGGAGCTGCTCACAGAGAGGTACCGGAAGCTGAAGGACATGGCGCAGGAGAGTCAAACTGCTCAGAACAAAAAGCTGAAGGAAATCTGTGTGAAGAAGCACATCTCTGATTCCGTGGCGCTGATCCGCAGGCTGGATGAGGCCCAGCAGGCGAGACGTCAGAGGCTGGAGACGCAGCACTCGGAAATCCTGCAGCTCATCTACAAGGAACTGCCCCtgCATCAGTGTCGACTGGAGGagcagctggagctggagaagcAGCAACTACCCGAGGAAGTCCGCAAGTTCCTGCAGACCCAGCTAGAGTCGGACGGCAAGAAGGAGCTCTTCAGCTTGTCCGCCTACGACAGCTCCGGCTCTGGACCACCGTCCAATCCCGGCACGCCTCCCATCTCTTCCCCCGACCGGAGCTGGCTGGGAGGGCGGAGCCTGGACAATAGCAACGCCTCCCTGGCCGACTCCTCTTCCTCCGGAACGCCCGTCATGTCGGAGGCGGAGCTTAATGCTGTCTAGCACTGGTGCACTATGGCCACGCCCCCTCCACCCACATACACCGACAGACACACCGATGACAACCTCATTGGACGAGAAGCCGAGGGgccgccccctctctctctccccccgtGGTCTCTCcagctttttaaacattttaattgtaattttaattttaatttaattttttatttttttaatggtattgttaaagacaaaaaatactTCTTCCTTTTCATGGCATTTTTTTAACTGTCCCGgattttatgattgtttttaatctctATGCTGCctttttggttattattttattctttgtttttgtttggttttgtgcaGCATCTGTGTCTGTTCTCTGCTAACCTTCCCAGGCCTCCCACAGCACAGTTTAAATTGGTAATGCTTTCCCCCGGCACAAGCCTATATATTGTGAGTGTGGATATCTATGGATACTACAGATTACTGCACTGTTTAAGGGGCACATAGACAATTGCATCAAAGACGTTTTGATGACTCTTGTGATGTTGGCCAGGTGTTGGCGTGTTGacactgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtccTGGAGAGAATGAGCCCAAGAACATCGTCATGGTGGTGATGTACTCTGAGCTGGaatggttttaatttacattggcATGTTTGCAGTACCTAAAATGCAGCCACCAGAGGGAGACATTACTTTAGAAACAAGCACTTGGGATTGGAGggccagagagagagtgatttataatacaattttacatttgaattgtaatTTGAGAGCACGAGCAAGCGAGGGAATGAGCACCGCTGTGATTGGTCGAGACACACTGGGCGCTCCTGAAATTGTCCTGAATGCACAACAAGCAAATGGATTTTAGAGACCTGGCTTCAGATGCTATGAGGACAGCAGTATAAACTCAGGGGAGAAGGagcgagggggggggggggttgtaaaCTTGGCCAAGTGCGAcagagtttttttaaattattgattggaatgggctttttttttcaatttgttatgCGTGTTGGGGGGGAGGGTAGGTTTGTTAACTCTGGTTTTGATTGTCTTTGGGTTTGTAATGAtggtttgtcttttattttgtggttcGAACGTTCTGCTACTGACTCTACGAGTGGGTTGAAAGGTGGTGGGGGAGGGACGGAAAAGGGGGATGATGTGATATCATCGTCTGGTGGAGAAATAATGTCTTGTCATTTTTTAACTGTTGTtgcccatttttattttattttgtaaacggGGTGGGAACAGTTTTTGACGTagtttgcaattattattttacaaaaagatTTTTCAAGAAACTAAAAGGGAATATTTTCCTGCTTCgttgagaaaaataatattttaatgcatactttttacaaacattttcttttattagcTTCTAAACACACCCTCACTTTTATAtcaagatatatatgtatatttacgtgtgtgtgtgtatgtgtatatatatata

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121621 lncRNA upstream 3084 8624089 ~ 8624687 (+) False G97547
TU121620 lncRNA upstream 3295 8624089 ~ 8624476 (+) True G97547
TU121616 lncRNA upstream 11451 8613255 ~ 8616320 (+) True G97543
TU121407 lncRNA upstream 147234 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 215890 8404152 ~ 8411881 (+) False AMCG00015363
TU121635 lncRNA downstream 37319 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 64132 8719241 ~ 8719562 (+) True G97588
TU121703 lncRNA downstream 122108 8777217 ~ 8779046 (+) True G97612
TU121720 lncRNA downstream 128637 8783746 ~ 8783991 (+) True G97618
TU121721 lncRNA downstream 129103 8784212 ~ 8785276 (+) True G97619
AMCG00015377 mRNA upstream 14907 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015378 mRNA upstream 31158 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015370 mRNA upstream 55706 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015368 mRNA upstream 94630 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015369 mRNA upstream 103212 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015381 mRNA downstream 74865 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015383 mRNA downstream 80852 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015382 mRNA downstream 93778 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015391 mRNA downstream 143124 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015389 mRNA downstream 147318 8802427 ~ 8809201 (+) True AMCG00015389
TU121580 other upstream 82989 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 94367 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 195651 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 232362 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 324802 8295087 ~ 8302969 (+) True AMCG00015358
TU121633 other downstream 31659 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 173627 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 222183 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 296684 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 296684 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile