RNA id: AMCG00015377


Basic Information

Item Value
RNA id AMCG00015377
length 843
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00015377
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8608850 ~ 8612864 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagagagagagaggactttCTTGGCTCCAGTACGAGCTGCACGTTTACAAAGTTGGTGTCAGCGTTTTTGCAGTTCTTTTCTGGGCTAGAGTTGCCTAATCAGAGAGCGGATTAAAGatgcgGGTGTGTGTCGTGGCGATggccctcctctccctctccccgctGTGTCTGGGCAGCGAGGGCAAGAAAAAGCTGCAGATCGGCATCAAGAAACGCGTGGACAACTGTCCCGTCAAGTCACGCAAGGGCGACGTGCTGCACATGCACTACactGGAAAGCTGGAGGACGGGACTGAGTTTGACAGCAGCATCCCCAGGAACCAGCCCTTCACCTTCACCCTGGGCACCGGCCAGGTCATCAAGGGCTGGGACCAGGGCCTGCTGGGgaTGTGTGAAGGAGAGAAGAGGAAGCTGGTGATCCCCTCTGAGCTTGGTTATGGAGACAGAGGCGCCCCCCCCAAGATCCCAGGTGGTGCGACGCTCATTTTCGAAGTGGAGTTGCTGACAATCGAGCGCAGGTCCGACCTCTGAAGCTCTGACTGCAATGAGAGGTTCGGACATGGGGCAGCGTctgtcccccaccccccgcctCCTGTCCCTGACCCACACTGGGAGTGGTAGGAGGTAGGGGGGGTGTAGAAGAGACAATTCCAAATCTCCAAACATTCATTCCCAGATTCTCATCGctgtcaattattattattattttgtaattcttaCAGTCGGGAATTGCAGGAAAAAGTCTAAATCTAATGCCACCAATTCTTgacctggaaaataaaaaagcacttgaattataataatgaaaaataaaaaataaagtgtctaCCTAAGA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09569 FKBP2; FK506-binding protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121407 lncRNA upstream 128313 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 196969 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 296651 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 296651 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 303173 8303385 ~ 8305677 (+) True AMCG00015362
TU121616 lncRNA downstream 391 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 11225 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 11225 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 79564 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 106377 8719241 ~ 8719562 (+) True G97588
AMCG00015378 mRNA upstream 12237 8591916 ~ 8596613 (+) True AMCG00015378
AMCG00015370 mRNA upstream 36785 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015368 mRNA upstream 75709 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015369 mRNA upstream 84291 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015364 mRNA upstream 164956 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015376 mRNA downstream 14907 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015381 mRNA downstream 117110 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015383 mRNA downstream 123097 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015382 mRNA downstream 136023 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015391 mRNA downstream 185369 8798233 ~ 8800278 (+) True AMCG00015391
TU121580 other upstream 64068 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 75446 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 176730 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 213441 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 305881 8295087 ~ 8302969 (+) True AMCG00015358
TU121633 other downstream 73904 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 215872 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 264428 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 338929 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 338929 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile