RNA id: AMCG00015378


Basic Information

Item Value
RNA id AMCG00015378
length 2187
RNA type mRNA
GC content 0.64
exon number 11
gene id AMCG00015378
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8591916 ~ 8596613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGaaattttgtttctgtacttgGGTTAaattctcctcctcctcgtctctctccctgcagacGAACATCCCGTTCCTGCAGAATGTCCTCACTAATGACCAGTTCCTGCGGGGGACTGTGGACACTCAGTTCATCGACGAGAATCCTGACCTGTTTAACCTCAAGCCCGTCCAGAACCGAGCCCAGAAACTGCTGCATTACCTGGTCAAGGCCAAAGCGTCGCCCATTGACCCCGTTGTCCCCCCAGTGCCcctggGTGAGCCCCCAGCGGGGCTGCGAGAGGTCCTGCTGAGGGAGGGTCCGGAGGGCTTTGCCAAGGCGGTGCGCCGCCAGCCCGGCCTGCTGCTCATGGACACCACATTCCGCGATGCTCACCAGTCCCTGCTGGCCACACGTGTGCGCACACACGACCTCAAGCACATCGCACCCTTCGTCGCACACAACTTCAGCGGCCTGTTCAGCCTGGAGAACTGGGGAGGGGCGACCTTCGATGTGGCGATGCGCTTCCTGTACGAGTGTCCGTGGCGACGGCTGCAGGAACTGCGCCGTTTGATCCCCAACGTGCCGTTCCAGATGCTGCTGCGCGGGGCCAACGCCGTGGGCTACACCAACTACCCTGACAATGCTGTGTTCAAGTTCTGTGAGGTGGCGAAGGAGAACGGCATGGACATCTTCCGTGTCTTTGACTCGCTCAACTACCTCCCCAACATGCTCCTGGGCATGGAGGCAGCGGGCGCGGCGGGGGGTGTGGTCGAGGCAGCCATCTCCTACACAGGCGACGTCTCGGACCCGAGCCGCACCAAGTACAGCCTGCAGTACTACCTGGACCTGGCTGAGGAGCTGGTCCGGGCCGGCACTCACATCCTGGCCATCAAGgacatGGCAGGCGTGCTGAAGCCCAGTGCGGCACGAATGCTGGTGGGGGCTCTGAGGGACCGGTTCCCCGACCTGCCAATACACATCCACTCCCACGACACGGCGGGCGCCGGGGTGGCAGCCATGCTGGCATGCGCAGAGGCCGGGGCAGACGTGGTGGACGTGGCCGTGGACTCCATGTCTGGCATGACCTCCCAGCCCAGCATGGGCGCCATAGTGGCCTGCACACAGCACACGCCCCACCACACCGGCATCGCCCTGGACAAGGTGTTTGACTACAGCGAGTACTGGGAGGTGGCACGGGGGCTGTACGCCGCCTTCGACTGCACCGCCACCATGAAGTCTGGCAACGCGGACGTGTACGAGAATGAGATCCCAGGTGGCCAGTACACTAACCTGCACTTCCAGGCGCACAGCATGGGCCTGGGCCACAAGTTCAAGGAGGTGAAGAAGGCCTACGCAGAGGCCAACAAGCTGCTGGGAGACCTGATCAAGgtGACCCCCTCCTCGAAGATCGTGGGGGACCTGGCCCAGTTCATGGTGCAGAACGGGCTGGGCCGGGCCGAGGTGTTGGAGCGGGCGGACGAGCTGTCCCTGCCGCTGTCAGTGGTGGAGTTCCTGCAGGGCCACATCGGCATCCCCCACGGGGGCTTCCCCGAGCCACTGCGCTCAAAGGTACTAAAGGACCTGCCAAGGATTGAGGGCCGCCCAGGGGCCAGCCTGCCCCCCCTGGACTTCGCAGCCCTAGAGAAGGAGATTCGCACCCGGCACGACGACGTTGCCCCGGAGGACGTGGTTTCTGCTGCGATGTACCCGCGTGTGTACGAGGAGTTCCGGGACTTCACAGCCCAGTTTGGCCCGGTCGAGAGCCTCAACACACGCCTCTTCCTGGAGGGGCCCAAGATCGCAGAGGAGTTCGAGGTGGAGCTGGAGAGGGGCAAGACTCTGCACATCAAGGCGCTGGCCCTGGGGGACCTGAACACGGCTGGACAGAGGGAGGTGTTCTTCGAGCTCAACGGCCAGCTGCGCTCAGTGCTGGTCAAGGACACAGTGGCCATGAAGGAGATGCACTTCCACCCCAAGGCCCTGAAGGACGTGAAGGGGCAGGTGGGGGCGCCCATGCCGGGCAAGGTGATGGAGCTGCGGGTGGCCGAGGGGTCGACCGTCACCAAGGGCCAGCCACTATGCGTCTTGAGCGCCATGAAGATGGAGACGGTGGTCAACAGCCCGCTGGACGGCACGGTGCGGCGCATCCACGTGCGGCCGGACATGAGCGTGGAGGGGGATGACCTCATCCTGGAGATCGAGTAG

Function

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004075 biotin carboxylase activity molecular_function
GO:0004736 pyruvate carboxylase activity molecular_function

KEGG:

id description
K01958 PC, pyc; pyruvate carboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121407 lncRNA upstream 111379 8477222 ~ 8480537 (+) True G97383
TU121401 lncRNA upstream 180035 8404152 ~ 8411881 (+) False AMCG00015363
TU121380 lncRNA upstream 279717 8307580 ~ 8312199 (+) False AMCG00015359
TU121381 lncRNA upstream 279717 8307580 ~ 8312199 (+) True AMCG00015359
TU121379 lncRNA upstream 286239 8303385 ~ 8305677 (+) True AMCG00015362
TU121616 lncRNA downstream 16642 8613255 ~ 8616320 (+) True G97543
TU121620 lncRNA downstream 27476 8624089 ~ 8624476 (+) True G97547
TU121621 lncRNA downstream 27476 8624089 ~ 8624687 (+) False G97547
TU121635 lncRNA downstream 95815 8692428 ~ 8692642 (+) True G97560
TU121670 lncRNA downstream 122628 8719241 ~ 8719562 (+) True G97588
AMCG00015370 mRNA upstream 19851 8552798 ~ 8572065 (+) True AMCG00015370
AMCG00015368 mRNA upstream 58775 8530143 ~ 8533141 (+) False AMCG00015368
AMCG00015369 mRNA upstream 67357 8514713 ~ 8524559 (+) True AMCG00015369
AMCG00015364 mRNA upstream 148022 8433483 ~ 8443894 (+) True AMCG00015364
AMCG00015365 mRNA upstream 158824 8427695 ~ 8433092 (+) True AMCG00015365
AMCG00015377 mRNA downstream 12237 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015376 mRNA downstream 31158 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015381 mRNA downstream 133361 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015383 mRNA downstream 139348 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015382 mRNA downstream 152274 8748887 ~ 8753046 (+) True AMCG00015382
TU121580 other upstream 47134 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 58512 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 159796 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 196507 8382697 ~ 8395409 (+) False AMCG00015363
TU121378 other upstream 288947 8295087 ~ 8302969 (+) True AMCG00015358
TU121633 other downstream 90155 8686768 ~ 8687680 (+) True G97558
TU121740 other downstream 232123 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other downstream 280679 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 355180 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 355180 8951793 ~ 8953675 (+) False AMCG00015396

Expression Profile