RNA id: AMCG00015390


Basic Information

Item Value
RNA id AMCG00015390
length 1779
RNA type mRNA
GC content 0.69
exon number 1
gene id AMCG00015390
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8877292 ~ 8884897 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGGCTGTGGGGGGGTGCTGGGCTGGTGTGCACTCTGCCAGGTGGACGTGCTGGACCAGGACAGCGGCTACTACGGCTCGGCAGGGCGGCTGCAGCAGGCCAGCCCCTGCAGCAACGGCTACGTCTACATCCCACTGGCCTTCGCGGGGATGCTGTACGTGGTCTACCTGGTGGAGTGCTGGCACTGCTTCAGCCAGAGTGCCGCGCTGGCCCGGGTGGAGATCGGCGATGTGTACGAGCGCGTCCAGCGGCTGCAGCGTTCCACCCCCTGCATCTGGTGGAAGGCCATCAGCTACCACTACGTGCGCCGGACCCGGCAGGTGACGCGCTACCGCAATGGCGATGCCTACACCACCACACAGGTGTACCATGAGCGGGTCAACACGCACGTGGCCGGCGCCGAGTTCGACTATGGTGCCCATGGAGTGCGGGACGTTTCCAAGGAGCTGCTGGGCCTGCACGACCACCCGGCCACCCGCCTGCGCTTCACCAAGTGCTTCAGCTTCGCCAGCGCTGGTGCCGAGGCAGCCTACCTGACCCAGCGGGCCCGCTTCTTCGGCGACAACGAGGGCCTGGACGACTACATGGAGGCGCGTGAGGGCATGCACCTGAAGAATGTGGACTTCCGCGAGCACATGGTGGCCTTCCCCGACCCTCGGCGCCCGCCCTGGCACACCCGCCGGCCCCTCTACTGGGCTGCCTCCCTGCTTCTGCTCTCCTGGCCACTGCGGGTTGTCTCTGAGTACCGCACCGCCTACGTGCACTACCACGTGGAGAAGCTGTTTGGGCTGGAtgaggaagggggtgggggcacGCCCTCAGAGGAAGGAGGTGGCGGAGGGGCGGGGCTGGGGGGCGGCGGCGGAGGCATCCCCCGGGTTAACACCATCGACCTGACTGAGCTGGAGTGGCACATACGCTCCAACCAGCAAGTGGTGCCCAGCTACTCTGAGGCACTACTGATGGACCTGGCCACCTCGGCCTCTgcaggtgggggggtgggtggcACCAGCGGGGTGGGAGGGGTCAGCCTGCCTGGGGGCTTCCCAGCCTCCTCGGTCCAAGGATGCGGCCGCTGCTGCCCCCGCTCCCTCAGCAGCACCTCCCTGCCCCCGCTGCGCTGTGCACGCACCCCCaaccccttctctctcccccccggCCTCTACAACCATCCCCCACTCCCTGCGCCAACCTCGACCGCCGCCGCTCCCCCCCAGGCCAGCTCCCGCCTGCCTTTCAGCCGCAGTCGCTTCTCCCTCGGCCTCCTTCAGCCCGGCCGGCGCGGGCGGCTCTTCCGCAGTCTCAGCGGACGGGTGGACGAGGCCAGCTTTGCTGACGATGAAGAGAGCAGGGCGCTGGGCcctggggaggaggaggagggggaggaggaagaggaggaagctggggaggaggtggagggggaggaaggcggagagggagagcaggaggtAGGGGAAAGAGGCCGGCGGCGGGAGAGGAGGCGGCGGAGGAGATGGCGGAGGAGGCGGAGGTGGCGGAGGAGGCGGAGGGGAGtagtggtggggggtggggatggaggaggaggaggaggagggggagagggggaagaggaagaagaggaggaagtgGGTGGGGAGGATGACAGCCCCCCCTCTTATCGGGACGCGCTGTCCTTCCCCGTGCTCATCGTCCATGGCGCCGAGAGCTGTCACCGCGATAACCCCCTCTTGCCCCGGCAACGTCCCCCcgcacccccaccacccccctgCCTCGCGCCCACTGGGACGGCGCTGTGA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04725 Cholinergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121722 lncRNA upstream 92452 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 92452 8789690 ~ 8790667 (+) False G97620
TU121721 lncRNA upstream 97843 8784212 ~ 8785276 (+) True G97619
TU121720 lncRNA upstream 99128 8783746 ~ 8783991 (+) True G97618
TU121703 lncRNA upstream 104073 8777217 ~ 8779046 (+) True G97612
TU121754 lncRNA downstream 27117 8912014 ~ 8964118 (+) True G97640
TU121756 lncRNA downstream 27117 8912014 ~ 8961725 (+) False G97640
TU121770 lncRNA downstream 57527 8942424 ~ 8950080 (+) True G97650
TU121779 lncRNA downstream 86569 8971466 ~ 8978004 (+) False AMCG00015398
TU121783 lncRNA downstream 98605 8983502 ~ 8984908 (+) True G97663
AMCG00015392 mRNA upstream 51405 8825512 ~ 8831714 (+) True AMCG00015392
AMCG00015389 mRNA upstream 73918 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015391 mRNA upstream 82841 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015382 mRNA upstream 130073 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015383 mRNA upstream 140634 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015397 mRNA downstream 1279 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015395 mRNA downstream 41605 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015396 mRNA downstream 66839 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015399 mRNA downstream 79563 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015398 mRNA downstream 90445 8975342 ~ 8977087 (+) True AMCG00015398
TU121633 other upstream 195439 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 338337 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 349715 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 450999 8342493 ~ 8432120 (+) False AMCG00015365
TU121758 other downstream 66896 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 66896 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 66896 8951793 ~ 8953675 (+) False AMCG00015396
TU121801 other downstream 144820 9029717 ~ 9032785 (+) False AMCG00015407
TU122193 other downstream 821200 9706097 ~ 9710729 (+) True G98000

Expression Profile