RNA id: AMCG00015392


Basic Information

Item Value
RNA id AMCG00015392
length 1851
RNA type mRNA
GC content 0.66
exon number 5
gene id AMCG00015392
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8825512 ~ 8831714 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCTCGACTGCCCAGACAGCCAGCCCTGCCCCGATTCCCCACCTCATAGCTGCCCCTACCCACTGTACGAGCGCCCCCCCCGGGCTCCCTCCTACCCCTACCCCCTCCCCTCCAGCTCCCTCATCTCCCGGCTGCTCCAGGGAAGCACGGACGGGAGCGGCCGCAGTCCCGGGGCTGGCCAGGAGGGCAGTGCTGTGGGGGAGAGGTTTGGGGGCTGCAATTCAGAGGACGAGGAAgaagtggaggaggagggggaggaggaagagggggaggggatggGAAAAAGGGGAGCCTGCACAGAGGTGGAGGTGCTGTACCAGGAGTTCCTGCGAGTGAAGAGAGCCAGGGTGGAGAGTATAGTCCGGGGCATAGAGAGCCAGGGAGAGGGgcaggtgggggagggggggagggaggggtggcGGCTCCTGGAGGGAGAAGGGAGGGGCGAGgaggcagggaggagaggaggaagaggaggagaggaagggaggagtaggaggcagagggagaggtggGAACTGAAGAGCCAGTTGGAGAGCATGAGGGAGCAGCTCTTCCAGTTGCAGGAGAAAGTTTTGGAGATGTATGGtgggagggagaaagggagaggcagagggagagggagaggcagggaggcgAGGGAggagagggcgagagagagggagctgttttccgaggaggaggaggaagaagaggaggaggaggaggaggaggtgggaggagaggaggaggaagaagaaggagtGAGCTCCCGGTTTCAGCTCTCTGACCCCGACTCTCTGGGGTTCGGCGGGGGCGGGGCGGGGATACTGGCCAGAGCCTGTGCCCAGCTGGGGGGCGAGGCCGGGGCCGGGCCCAAGCTGGCCGCCGCCCTGAAGGAGGAGCTGGGGGCAGCGGTGGCGCAAGTAATCGACGGCGTGGTGCGCCTCTACTCGGCCGATCCTGGGCCACCCCAGCCTGCCCACTCCCACGGCCTTCCCccggcctcctcctcctcctcctcctccccgccgcccccacccccacgcCCCATGGAGGACAGGTATTTCGGGGGCGGGGCCttacaggagagagaggggcggcAGTTTTACACCGAGCAGCAGGAGGCGCTCCCGCTGGTGATGGAGAAGTTCGCCCGGCAGGCGGTGGGTGAGGGGGTGGCGGCCGCCGAGGTGCTGACCTTGCGCCACGACTCCGAGCTTGTCCGCGTCCTCAGCCTGCACTACAACAAGAGCAGTGACTACCAGATCCCAGCACGGTTCTTGGAAGTGGCAGAGGTCACTCTGAGGGAGTTCTTCACTGCTGTCCAGTCTGGCCGTGACACTGACCCCTCCTGGAAGAAGAGCATCTACAAGGTCATCTGCAAGCTGGATAGCGAGGTGCCTGAGCTCTTCAAGACCCCTGGCTGCCCACAGGACCCTGGGCACGATGGACACACTGACCGCCCGCCCAATTCAGACCCTGGACTCTACACATCGCCATCTGTGGGCAGCGTGGTGAAGCgatgctggctggctggctggcaggGCGTGTGGAAGTCCATCTGGGGCCCCGGCACCGGCTACTCCTCCCCCGCTCCTCTCCTCCAGGTGCACAGCGAGCGAGCCCTGGGCTGGACTGGTCCCGGCGCGGACACAGAGTCTGTGACTGCCCAGAGCTGGGCTGCCCCTGCTGCcaccatgtgtgtgttttggaAGGTGAGCTGCCGGTGCGCCCAGCGCCAGTCCTCCTCTCGCTGTGTGCGCTGTGCCTTCTCCACCGCCTCCGCCAGGCCCGGGAACGAGCGCACCGAGGACGACACCGGGGCCCACAGCACGTGCCTGAGAGAGTGGGGGGACAGAGGGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121722 lncRNA upstream 34845 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 34845 8789690 ~ 8790667 (+) False G97620
TU121721 lncRNA upstream 40236 8784212 ~ 8785276 (+) True G97619
TU121720 lncRNA upstream 41521 8783746 ~ 8783991 (+) True G97618
TU121703 lncRNA upstream 46466 8777217 ~ 8779046 (+) True G97612
TU121754 lncRNA downstream 80300 8912014 ~ 8964118 (+) True G97640
TU121756 lncRNA downstream 80300 8912014 ~ 8961725 (+) False G97640
TU121770 lncRNA downstream 110710 8942424 ~ 8950080 (+) True G97650
TU121779 lncRNA downstream 139752 8971466 ~ 8978004 (+) False AMCG00015398
TU121783 lncRNA downstream 151788 8983502 ~ 8984908 (+) True G97663
AMCG00015389 mRNA upstream 16311 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015391 mRNA upstream 25234 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015382 mRNA upstream 72466 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015383 mRNA upstream 83027 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015381 mRNA upstream 93751 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015390 mRNA downstream 51405 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015397 mRNA downstream 54462 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015395 mRNA downstream 94788 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015396 mRNA downstream 120022 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015399 mRNA downstream 132746 8964460 ~ 8965650 (+) True AMCG00015399
TU121633 other upstream 137832 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 280730 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 292108 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 393392 8342493 ~ 8432120 (+) False AMCG00015365
TU121749 other downstream 45578 8877292 ~ 8883953 (+) False AMCG00015390
TU121758 other downstream 120079 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 120079 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 120079 8951793 ~ 8953675 (+) False AMCG00015396
TU121801 other downstream 198003 9029717 ~ 9032785 (+) False AMCG00015407

Expression Profile