RNA id: TU121758


Basic Information

Item Value
RNA id TU121758
length 1369
RNA type TUCP
GC content 0.57
exon number 3
gene id AMCG00015396
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8951736 ~ 8953684 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTGGCGCTGCGCTGTGTCTGCCGTCACTGACCCGCTCCGCCCGGCACCATGAGCAGTGTCACCTGGATCACCTACTCCGGGCTCATCGCGGGGGCCGTGGGGGTGGCGTGCGGGTATTGGATGGTCACTGCACCGGGGGAGCAACGCCGGAGAGACATACTGAAGGACCTGCCGGAGTCCAACCCGCTGCGGCGAGAGGAGACCCGGCGTCTGAACACGTTGCAGCTGCAGGTGCTGAAGGAGGCGGCCGAGACCAACGAGAACGTGTCCCGCCGCTTCGGGAAGTAGTGCGCCGGACCAGGCAGggacgggacaggacaggagaCGCACTCCTCTGCATCTGCACCCTCTTGTGTGTATGACTTTGTAACCGCTCAAAATCCAGGGAAGGTCTGTCCAGGAGCggtgttttctgtctttctgtgaaCGCCTTCCGCTGTATTataatgtgtacaaatgtgattatttcccttttcaataaACGAGTTCTATAGACattcaatgtaaataaatccaATAAAGTTATGAAATAAAGCATTCGCACTGTGTTCACGTCTGTTCTGCCGAAGGGGTGAATGTCACACACCGGGGGAACCATTTCACAGGCGCACCGGAAGCCGGGGCCGCCTCTTCCGGCGCAGAAGCGACTGCGGTCCACAACCCGGAAGGAGGAGCGTGTGAACTGGGGTAAGATCGGCGTGCGAGGTCGCGGCGGGGTAACGTGTTGGCGGCTACTGGTTTAAGTGAATTGATGATGCATGTGTTACTTAGACAATAAATGCCTGCACAGTTAAAACGACAGTATCGTGGAAGTGTATAATCTCTCTCGCTATACATATCTCAATTCATTTTTCCCAAAAGTGACACGATTAACAATCATACATGCTACGCGTTTGAGCGACGCAGCGACTCCTCCATGTCTGCAAACCCGGGCGCGCCGTCCCCGGCCCAGGCCTCCCCGGCGCCGCTGTTCGGGAGCTGCTGGAGCTGCCGGCTTCTGTGCGGCTCCGGGCTGCTGCTGGCCGGCGGGTACGTATTCATGGCGGCCCGGGGCGTGATGAAGAAGGGCGGCGCGACCTCCATGGGGACGGTGGCTCAGATCGCCTTCGCTGCCAGTCTGGCAGCCTGGGGCATAGTTGTGATGGCGGACCCTGTGGGAAAGTCCAAGAGGAAGAGCTGatggaccccccccccccccccccggtgaCCTGTACTGACTGGCAGAGCAGTGTGGACACAGCGCACTCAGATGTGATGTCACCCTGTGGGATCACGGCGTCCTCAGGCACAGACTACTGAGAATAATAGTCTTCATCTTGAGGTTGATTTggattgtaaataaatgttggaACAGAATCAGAACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121770 lncRNA upstream 1713 8942424 ~ 8950080 (+) True G97650
TU121722 lncRNA upstream 161126 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 161126 8789690 ~ 8790667 (+) False G97620
TU121721 lncRNA upstream 166517 8784212 ~ 8785276 (+) True G97619
TU121720 lncRNA upstream 167802 8783746 ~ 8783991 (+) True G97618
TU121779 lncRNA downstream 17791 8971466 ~ 8978004 (+) False AMCG00015398
TU121783 lncRNA downstream 29827 8983502 ~ 8984908 (+) True G97663
TU121799 lncRNA downstream 70970 9024645 ~ 9030399 (+) True G97676
TU121804 lncRNA downstream 76042 9029717 ~ 9032785 (+) False AMCG00015407
TU121733 lncRNA downstream 114268 9067943 ~ 9072295 (+) True G97623
AMCG00015395 mRNA upstream 22017 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015397 mRNA upstream 60472 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015390 mRNA upstream 66896 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015392 mRNA upstream 120079 8825512 ~ 8831714 (+) True AMCG00015392
AMCG00015389 mRNA upstream 142592 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015399 mRNA downstream 10785 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015398 mRNA downstream 21667 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015407 mRNA downstream 75882 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015406 mRNA downstream 103098 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015412 mRNA downstream 167729 9121404 ~ 9124009 (+) False AMCG00015412
TU121740 other upstream 58777 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other upstream 67840 8877292 ~ 8883953 (+) False AMCG00015390
TU121633 other upstream 264113 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 407011 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 418389 8529018 ~ 8533404 (+) True AMCG00015368
TU121801 other downstream 76042 9029717 ~ 9032785 (+) False AMCG00015407
TU122193 other downstream 752422 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 803398 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 862043 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 975917 9929592 ~ 9930804 (+) False AMCG00015464

Expression Profile