RNA id: TU121740


Basic Information

Item Value
RNA id TU121740
length 2270
RNA type TUCP
GC content 0.52
exon number 3
gene id AMCG00015397
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8828736 ~ 8893016 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagggagagggagagagagaggcgtcCAAAACTGCGTCCGTCGTGTCAgagtgttatttattgatttattattttatttacttccaCAAGAAGCGACCGAAGAAATCTAGAAGAACCGACACAAACTGATTGCGCTAATATCGCAAATCCCCGCAGGAGCCAGAGACCCGTTAGACCAGCGGGGAGCCAGGCAGCCCGCCGCGGTGCGACCCTCCGCCGGGCAGGACGCCACCGATACCGAATCTCTGAAGCTCTGACCGGCCTGACTCGACCGCTGCGcccccctctctctctgcagtgatGTCTCGTGACCAGGTGGAGTCGGTGGTGCGCAGTGTGGAGACCCTGCTCGCCGAGGCGGGGGCCCTGAGGGACCGCTGCCGGCGCCAGAACGAGGAGGTGGCTGTGGCGACGCAGGCCCTGCGGGAGGAGGGGGCGGAGCTGGCGCAGCGGTGTGTGCAGGTGCAGGTGGACATGGCCGAGCTGCGCAGGCACCTGGATGAGCTGCAGGACACCCGGGTCGCGATCGAGGCCCGAGAGAGGCAGGTCCGCAAACTGAGCAAACAACTCTgagaaggggaggggagagaaagagaggaggagggaaaggagTGGGAGAGAGGATAGGGAGATAGGACAGCTTATAGGCACAGAGAATAGGAGAGGAATCTGCAGAGACAGGATACTGCTTATAGACactgagagagatggagagactgGGTGTGGAgttgagagagggagggggaggatcAGGGCATAAttcagtctgggcccctatagtacagtccccacagcgccgGCTCCAGTCCGGGCCCCTATAGTATAGTCCCCCCACAGTGCCACTCTGGGCCCCTATAGTCCAGTCCCCCCACAGTGCCACTCTGGGCCCCTATAGTCCAGTCCCCACTGCGCCTGCTCCAGTCTGGTTCTTATaagtacatacaaatacaaaaatagagtGTAAAGTTTAATACACAGTAAAGTCAGTACTGAGGAGTTCTCCACATCCTAAATAACAACATGGCACAAGAACAACATGCCCTTGACATCGGCTCCCCATACAAAAGACcaaaatacttaatttcatTGGCTTTAACAATAAATCTGAACACAGACGCACAGGGCACACAATTAGCACAACCGCAGCAGATACACTCGGAACAAGTAACGCAGAAGGCACCAAGGCATGTACACACATACGAACACACGtgcactgaaaaacaacaatattggCAGAGGCAGCAGTAGGATCATTAGtgcaaaataaggaaaataaaaaagtgtataGATAttcaaatctttaaaaaataacataaggTACAAAGCAGGCTCAGTGAGGCCCCAGTCTCACCTCGGATTTGGCACTGCGGGTGAGAATGACGAAAGGACGAAACAGCCAGGAAAACATAGAGCAAAGCCAGGCTGCCTCGCCAAGACAATGTAATCTATTACATTTCCAAATAATGTggttcaattaaatgtaatagcATACAATGTCACAAGTGATATAAGGTAGTGCAGTGCAAagttatatacatttacaatgtaatatattactgtacagtacaatgcaatttaataaaatgttatgtaattcaatgtaatgtatGCCTGTGCAGtgcaatgtaatttaataaacagcAGGACTGACTGTCACTGTgagatttgtattgtttctgtgGTCAAGTCAGTAACACTGGcagccacacacactgaccgctctgacacacacacactgaccgctctgacacacacacactgaccgctctgatacacacacactgaccgctctgacacacacacacactgaccgcTCTCCCACATACAGGCACACTCAGATTCACACTGGCAGCCACTGGcagccacacacactgaccgctctgatacacacacactgaccgcTCTCCCACATACAGGCACACTCAGATTCACACTCGCATTCATACAATCTCACACTCAAAGTCACACTCAAGCCGACACTGCGCACACCCAcaaacactctctcacacacactgattggGGGCTCTCTGTGGCCAGTACAGTGGGGGAAAGGTCAGGGGGTCAGTGTGGCCACAGCAGAGTGTAGTGGAGCGGGGCTGGGGGTGGTCAGTGTGGGCGGCTGGGGCGGTGGAAGATGGGCTCGGTCTCCGAGGCGCTCCACTCGGGGTCGCCCCCACTCAGTCCACTGAACTCTGACCCCTGGCGGCGCTGCACCACCAACAGCGCCAGAATCAGCACCCAGAAGAAGAAGTTCACCCACACGGATgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121722 lncRNA upstream 38069 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 38069 8789690 ~ 8790667 (+) False G97620
TU121721 lncRNA upstream 43460 8784212 ~ 8785276 (+) True G97619
TU121720 lncRNA upstream 44745 8783746 ~ 8783991 (+) True G97618
TU121703 lncRNA upstream 49690 8777217 ~ 8779046 (+) True G97612
TU121754 lncRNA downstream 18998 8912014 ~ 8964118 (+) True G97640
TU121756 lncRNA downstream 18998 8912014 ~ 8961725 (+) False G97640
TU121770 lncRNA downstream 49408 8942424 ~ 8950080 (+) True G97650
TU121779 lncRNA downstream 78450 8971466 ~ 8978004 (+) False AMCG00015398
TU121783 lncRNA downstream 90486 8983502 ~ 8984908 (+) True G97663
AMCG00015389 mRNA upstream 19535 8802427 ~ 8809201 (+) True AMCG00015389
AMCG00015391 mRNA upstream 28458 8798233 ~ 8800278 (+) True AMCG00015391
AMCG00015382 mRNA upstream 75690 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015383 mRNA upstream 86251 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015381 mRNA upstream 96975 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015395 mRNA downstream 33486 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015396 mRNA downstream 58720 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015399 mRNA downstream 71444 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015398 mRNA downstream 82326 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015407 mRNA downstream 136541 9029557 ~ 9036615 (+) True AMCG00015407
TU121633 other upstream 141056 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 283954 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 295332 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 396616 8342493 ~ 8432120 (+) False AMCG00015365
TU121400 other upstream 433327 8382697 ~ 8395409 (+) False AMCG00015363
TU121758 other downstream 58777 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other downstream 58777 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other downstream 58777 8951793 ~ 8953675 (+) False AMCG00015396
TU121801 other downstream 136701 9029717 ~ 9032785 (+) False AMCG00015407
TU122193 other downstream 813081 9706097 ~ 9710729 (+) True G98000

Expression Profile