RNA id: TU121779


Basic Information

Item Value
RNA id TU121779
length 1361
lncRNA type sense_over
GC content 0.53
exon number 2
gene id AMCG00015398
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8971466 ~ 8978004 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaataaaaataaaagtcagtACTTTTAGTTTTAGTCAGTATTTACTTGAATGGGAATCATCAGCCAGTCAGGCTTTCAACAAATGTGATGACCCTGGGCAGCCAATGTGACGATCTCATTTGGCCAGTCAGCGACTCTGCTAACATGTACTAATGTCTCTGCCTGGCCGATCAGCGCTGCGATTCTGATCCTTACCGTCTCCTGATTGGCTGAGCTGATACCTGGAGGGCCGTCCTCCCCAGGTGGCACCTCCTCCCGCCCCATCACTGGGGTGGCCGCCGCCCGACCTCgcatgacctctgacctcagTTTCAGGAAGTCCTCAGTGGACAGGATATCTCGGGGGGAGTGGCTCTCCACATGCTCCTTAAACCTCTGGAGAGCCACTGGGGAGGCAAGAGACCCCCCCCAAGGAGGGAGCTGATCCAGGAGATGGACTAAGACACTGgggatgtttatatatattttttattattcagttttttggGGGAGTTTGGGctgtcaaaatcaaaacaactgATTATAAGTTAATGGTGTTACTTGATGCAGGCAGGGACCCCTTCAGAGACTGAGGTTGGGGGATGGGAAGGTTTTTTGTGAACACTGTCTCTGATGTGATTGGCAATTGGGGCCCAGTGGAGGGGATCCTGGGGgtcaaaatgaaacaataaaagaaTTTCAATGACAGCAGCTGATCTGATGGACTGGTTTCTCATTCTCTGTCTTTTGTCTGTGGTTTTCAGTGTTGTCTCTGTTTTACAAATGACACGCCCCTGCCGTCTCTGTAAGCACATCTCACTTCACATCTCAGGTCCAGTGTCAGCCCCGAAGCGTTGGACCAGCGTTGGCACAATGTTGGTCAGGGAGGATGAGCCAATGTTGGCCCTACGTTGATCAGGACAGGTAGACCAGAAAGTGCTTGGTGGGCCAGTATTGACTCCTTCCAAGGAGGGGAAGCGGTCTAGTCAATCGTTGGCCCCCCGTTGACACACCATAGGTCAATACAGGTAGGGCAGGATGCGGTAGGGTACGCGCTGGCAGTAGGTACCCCAGGCCAGGCCATACTTGCCCTGGCACTGGCGCTCGTCTCGTGCCTCCCGGTGCACCAACAGGGTGCAGAAATACACCACATAGAAATAGGGCAGGGGGTGGGATAGgcctgtggagagagggagggtgagtGGTTAGAGTTGGGTGTggatgtgtgtgagagactgtTGTGGGGGGGCGTGGGGGCTCACCACAGGGCAGTGACCAGGCCAGTGCCATCAGCAGGTCGCCCAGGTAGTTGGGATGCCTGACGAAGCCCCACCAGCCTGACACCAGCAGCCGCTTCCCTGTTGCTGTGGCGATGGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121754 lncRNA upstream 7348 8912014 ~ 8964118 (+) True G97640
TU121756 lncRNA upstream 9741 8912014 ~ 8961725 (+) False G97640
TU121770 lncRNA upstream 21386 8942424 ~ 8950080 (+) True G97650
TU121722 lncRNA upstream 180799 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 180799 8789690 ~ 8790667 (+) False G97620
TU121783 lncRNA downstream 5498 8983502 ~ 8984908 (+) True G97663
TU121799 lncRNA downstream 46641 9024645 ~ 9030399 (+) True G97676
TU121804 lncRNA downstream 51713 9029717 ~ 9032785 (+) False AMCG00015407
TU121733 lncRNA downstream 89939 9067943 ~ 9072295 (+) True G97623
TU121874 lncRNA downstream 241832 9219836 ~ 9220284 (+) True G97737
AMCG00015399 mRNA upstream 5816 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015396 mRNA upstream 17782 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015395 mRNA upstream 41690 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015397 mRNA upstream 80145 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015390 mRNA upstream 86569 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015407 mRNA downstream 51553 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015406 mRNA downstream 78769 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015412 mRNA downstream 143400 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015413 mRNA downstream 150031 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015414 mRNA downstream 161200 9139204 ~ 9139449 (+) True AMCG00015414
TU121758 other upstream 17791 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 17791 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 17791 8951793 ~ 8953675 (+) False AMCG00015396
TU121740 other upstream 78450 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other upstream 87513 8877292 ~ 8883953 (+) False AMCG00015390
TU121801 other downstream 51713 9029717 ~ 9032785 (+) False AMCG00015407
TU122193 other downstream 728093 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 779069 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 837714 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 951588 9929592 ~ 9930804 (+) False AMCG00015464

Expression Profile