RNA id: AMCG00015399


Basic Information

Item Value
RNA id AMCG00015399
length 459
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00015399
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8964460 ~ 8965650 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGAGCTCGGTTCGCCGGGGGCTGATGGCAGCCTATAGGTGTTTATCCTCGGCGAGAACACTGCCTGGTATCGGGGGCCGAGTACAGGTGCGTAAAGGCGGTAAGCGACTGATCCCGCCCAGCTGTGTACCCACGCCCCCTAAGCACACTGGCCCCACCCCCTCAGGGTGGACCCCACCCCCAGACGTGCCCCCCTCTCTTCCCTACATGGTGCGCCGGTCCCGCATGCACAACATCCCGGTCTACAGTGACATCACCCATGGCAACCGGCACATGACCCTGGTGAGGAAGATCGAGGGTGACATCTGGGCCCTTGAGCAGGAAGTGAAGCAGCACCTGGCCAAGCTGACGGGGAAGAGCCCACCCACACAGGTCAACGAGGTCACTGGGAGCATCCGGGTCAAAGGTCAATTCGACAAGGAGCTGAAAGCCTGGCTGGTGAAGAAGGGCTTCTAA

Function

GO: NA

KEGG:

id description
K17430 MRPL49, NOF1; large subunit ribosomal protein L49

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121754 lncRNA upstream 342 8912014 ~ 8964118 (+) True G97640
TU121756 lncRNA upstream 2735 8912014 ~ 8961725 (+) False G97640
TU121770 lncRNA upstream 14380 8942424 ~ 8950080 (+) True G97650
TU121722 lncRNA upstream 173793 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 173793 8789690 ~ 8790667 (+) False G97620
TU121779 lncRNA downstream 5816 8971466 ~ 8978004 (+) False AMCG00015398
TU121783 lncRNA downstream 17852 8983502 ~ 8984908 (+) True G97663
TU121799 lncRNA downstream 58995 9024645 ~ 9030399 (+) True G97676
TU121804 lncRNA downstream 64067 9029717 ~ 9032785 (+) False AMCG00015407
TU121733 lncRNA downstream 102293 9067943 ~ 9072295 (+) True G97623
AMCG00015396 mRNA upstream 10776 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015395 mRNA upstream 34684 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015397 mRNA upstream 73139 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015390 mRNA upstream 79563 8883119 ~ 8884897 (+) True AMCG00015390
AMCG00015392 mRNA upstream 132746 8825512 ~ 8831714 (+) True AMCG00015392
AMCG00015398 mRNA downstream 9692 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015407 mRNA downstream 63907 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015406 mRNA downstream 91123 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015412 mRNA downstream 155754 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015413 mRNA downstream 162385 9128035 ~ 9138925 (+) True AMCG00015413
TU121758 other upstream 10785 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 10785 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 10785 8951793 ~ 8953675 (+) False AMCG00015396
TU121740 other upstream 71444 8828736 ~ 8893016 (+) True AMCG00015397
TU121749 other upstream 80507 8877292 ~ 8883953 (+) False AMCG00015390
TU121801 other downstream 64067 9029717 ~ 9032785 (+) False AMCG00015407
TU122193 other downstream 740447 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 791423 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 850068 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 963942 9929592 ~ 9930804 (+) False AMCG00015464

Expression Profile