RNA id: TU121992


Basic Information

Item Value
RNA id TU121992
length 946
RNA type TUCP
GC content 0.61
exon number 9
gene id AMCG00015400
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8954513 ~ 8960144 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGAGGGGCGCTGGGCAGGTAGTTTGTCCCCAGCCTGCCACCGTAGTTGAGTCTTCCATGCGAAACGGAAGTAGCCGAGCGACTCTGTGAGTAAGCAAGTAGCTTTCATACCACAACAATacgttaaataaatattgtccaCAAAAAACAGATCACCGCTTCATCCATCCCGGGACCGATACTGTTAATTTCGGCGCAGGAGCATCGCGGAGTGTGGAGCGAGAGAAGCTGCAGTGAGATGGCGGAGAGCACAGCACTGGACACCCTGCTGGAAATGGGCTTCGACCGGAACCGCGCTGAGAAGGCTCTGGTTAACACTGGGAATCAGGGCATCGACCGGGCCATGGATTGgctAATGGAACATGAGAATGACCCTGATATTGATGAACCCTATGTGCCCCCCAAGGGCAATGTGCTGGGGGCAGGGGGCACCGAGTCAACGCCCCCCCCGGACTCCAGCGCAGAGGGCAATGCCGAGGGGTCACCGGAGGGGCAGGACAAGCGACCTTTGACTGAGGAGGAGAAATTGGAGCAGGTCAGGAGGCTGGAGCAGCTGATGCGGGAGAAGCAGCGCGAACGGGAGGAGCGCGAGCGCGAGGCCGAGGTGCAGCGTGAGAAGGAGCGGCGGCGGCAGGgccaggagctgctgcaggtgCGCCAGAGGCTGCAGGACGAGCAGATGAGGAAGCTGGCAGAGGAGCGGCTGCGCGAGAAGATGGAGGACAAGATGGCCAAgcagCGAGTGCGGGACAAGATCGccagagacagagcagagagagcGCTGAAGtttggAGGGGGCGCTGATTCCTCCTCCCCCCCCGTGGAAGCAGTGCCATCCTCGTCCGTGCCCCCCGTAGCCCAGGGAGCTCCCCCCGCCAAGAAAGACTACGATGAGTGTCGGATACAGGTGCGTTTGCTGGACGGCTCCGCGCTGTGCGCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121974 lncRNA downstream 998 8954513 ~ 8955417 (-) False AMCG00015400
TU121951 lncRNA downstream 164655 8789660 ~ 8791760 (-) True AMCG00015393
TU121950 lncRNA downstream 173782 8780737 ~ 8782633 (-) True G97801
TU121671 lncRNA downstream 236856 8719246 ~ 8719559 (-) True G97589
TU121653 lncRNA downstream 288364 8664075 ~ 8668051 (-) True G97575
TU121954 lncRNA upstream 107799 9067943 ~ 9072138 (-) True G97805
TU122021 lncRNA upstream 134011 9094155 ~ 9110050 (-) False G97860
TU122020 lncRNA upstream 147137 9107281 ~ 9110050 (-) True G97860
TU122024 lncRNA upstream 153872 9114016 ~ 9529153 (-) True G97861
TU122038 lncRNA upstream 194712 9154856 ~ 9156447 (-) False AMCG00015415
AMCG00015404 mRNA downstream 16500 8938912 ~ 8939915 (-) True AMCG00015404
AMCG00015401 mRNA downstream 23036 8929145 ~ 8933379 (-) True AMCG00015401
AMCG00015403 mRNA downstream 60147 8892855 ~ 8896268 (-) True AMCG00015403
AMCG00015394 mRNA downstream 117436 8830206 ~ 8838979 (-) True AMCG00015394
AMCG00015393 mRNA downstream 163836 8791521 ~ 8792579 (-) False AMCG00015393
AMCG00015405 mRNA upstream 9315 8969459 ~ 8974509 (-) True AMCG00015405
AMCG00015402 mRNA upstream 16955 8977099 ~ 8982886 (-) True AMCG00015402
AMCG00015410 mRNA upstream 23435 8983579 ~ 8990241 (-) True AMCG00015410
AMCG00015411 mRNA upstream 64500 9024644 ~ 9029070 (-) True AMCG00015411
AMCG00015409 mRNA upstream 78452 9038596 ~ 9040012 (-) False AMCG00015409
TU121969 other downstream 125881 8829302 ~ 8830534 (-) False AMCG00015394
TU121952 other downstream 161641 8792108 ~ 8794774 (-) False AMCG00015393
TU121599 other downstream 375314 8580299 ~ 8581101 (-) False AMCG00015372
TU121587 other downstream 413235 8541188 ~ 8543180 (-) False AMCG00015374
TU121510 other downstream 544533 8409987 ~ 8411882 (-) True G97455
TU122010 other upstream 78470 9038614 ~ 9040141 (-) True AMCG00015409
TU122046 other upstream 216074 9176218 ~ 9178667 (-) False AMCG00015419
TU122072 other upstream 393073 9353217 ~ 9355732 (-) True G97897
TU122362 other upstream 877358 9837502 ~ 9839510 (-) True G98094
TU122506 other upstream 1230277 10190421 ~ 10192287 (-) False AMCG00015497

Expression Profile