RNA id: AMCG00015407


Basic Information

Item Value
RNA id AMCG00015407
length 2546
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00015407
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9029557 ~ 9036615 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGCAGTTTCCTCACCCACTGTCGGTGAGGCTGGTGGTTTTAACAACGGTGCGGTGATCACGGAGGCTCACCGGTGGCGCATCCGGTGAATATAAGTCATAACCAAGCCCCCAACTTTGTGCACAAGACACCCACCCCCACGCCCAGCGGAGACAGTGTGTAGTCTATATTTAGGCACTGTAGTTCTTTTTGCCTGCTCGAATGGACACGGAGGGATCCTCCATCGGACAGGAATCTGCACAATAAAACCCAACAGCTTGCAATTCATGCAAACTCACGTCGCCATGTGCCAAGTCCTGCTTTCTTCTGCTGCGTAGACATGAATGGGTCACACGGACTGCCTCCCCTCATGGCGCAGTTATTCGGACTCTATTCCAGCCGACAATTGCTAAGCAAACAGTGCTGTCACAACGAGGGACTGGGCAGTACAGTTCAATAACTATGTTATGACAGGGGTGTGGCACCTGAGCATTCACGATATCCTTTTCGGACGAcgacagaaagaaaagaaaaatacaaatcagaataAAAGTATTTCTATGTCCTTATGTATTGGGTGATGTTTTACAGTGTTGCTTCTGTTTGGCTTTGCTACTGTATAGCGGCGCTTGGAGATACACTTTTTCGTTCAAACTTCAAAGGTTGCTTTAGCCACAGAACTTTAGTCGCAATAAATGAGCTCCGTGCCCCTCCTCGTTAGCACCACCGCAACGATAATCATTTCGCTGGCGGAGTTACTGTGCCAGGCTGAGCCGCGCAGGGCACTGGCACACGGTGCAGAATTAGCCCGTTGGTCCTGTGTGCACAAGACACTGTTCTGAGGGGCCATTAGCACCTGCCTTGTGAGAACATGCCTGCAGAGGAGTTTGTAGCTGGGTGGATCTCAGGGGCTGTGGGTCTCATTGTGGGGCACCCCATGGACACAGTGAAGGTGCGACTCCAGACCCAGTCAACCTACAGGGGCATCGTGGACTGTGTGATCAGGACCTACCAGTACGAGGGGATTTCTGGCTTTTTCAAGGGGATGGCTTTCCCTGTCCTCACCATCGCCATTAGCAACTCAGTGGCCTTTGGTACCTACAGCAACGCCCTGGACTACCTCATGCAATCACAGCGCAGCGACCGAGGCTCTGCCCCcTTCCTGCAGGAGCAGAATGAGGAGTTGCACCACAGCCTCCTGCAGGCCACCATGGGCATAGAGAGGATGGGGTCAGAGTTCAGGAGCAACCAACAGCAGCTGGAGGCAGAACTACAGAGGAGCAGAGAGGAGCTGGAGAGCCTGAGGGACAAGTTCAGGAGGTCATGGGGCGGGGCTTGGAGGGTAGAGAAAGAGAcagggcagggagggagggagggagaggaaggggtACAGATACTggggggagaggaagggagggagggGCTGCAAGACAGCTACTCCAGCTCCCAGCAGGCCAATCACCTCCTGGAGCAGAAACTACACTCTGTGGTCCAGAGTCTCGAGGGAGAGAAGGACTGCCTGAATCAGCGCATCTCAGAGCTCACTGAGCAGCTGCTCACCGCGCAGAAGACCATCTGCACCCTGGAGACCATTAATgTGCCCTCTCTGCTGCAGGAAGTCTTGGAGAAGCACTTCCAAATGGACGATGCCCCCGACCAATCACTGCTCCCTTTGGCCGTTGTCACACCCCCTCCCACCCAGTTCATGGACCAGGACCCACCGGAGAAGGAGGACCAAGCGCCGGGCCGGATGGGGCCAGTCCCGGAGGAGGGGGAGTCGGACTGGTCGGAGAAGGTgccagaggaagaggaggaggcaggGCGGGGGAGGGGCTCAGGCGGTCAGCGCAGGGTCACGGCCTTTCAGCCCtggaagcagcagcagaagagggggaggaaggaggtcaggtggggagggggaggcggGGAGGGCGAGACGACGGAGGAGAATGAGTCAGGGGCGGAGGAGGGGAGgcgccccccccacaccctgcAGGTGCCCCTCTTCCAGTTCAGCCTGCACACTGATGCCCCGGAGAGGGAGCGTGGGGGCGGGTCCGGGGAGGGGTACGGCCTGGCGCACAAGCTGACCTCTCCGATCCGGGCTCTCTCTGCCAGCCTGGAGGAGATCCACTCGGCCTCCAGCCACCAGAACCAGCTCTACAGCCTTGGCCTGACTCACGGGCCCCTGACCACCAGCGCCGCCCTACAGGAACTGCACCGTCCAGGAAGAGGGggtgtggaggaggaggaagaggaagaggacgaCGACTCGGACACAGATGAGTTCTTCCGCAGCTGGAAGAAGAGGAACAACAAGAGGGAGGGCCCGGGCAGCGCAGGGGGCAGGGGCTCCAGGGTGGAGGTAGGATCAGGCCTGGGCAGAGGCAGGGTGGGGGTGGACGGGGGTCCGGGCAGCTACCAGTCAGCCCAGCGGATGCTCGATTGCTTCATCCGGCAGCTGCAGCCccctgaggaagaggaggagcgggaggaggagaggagggctGGCAGGGCCGGGGGGCGGGAGGGTGTGGTGAATGGGGAGAAACGTTCCCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121783 lncRNA upstream 44649 8983502 ~ 8984908 (+) True G97663
TU121779 lncRNA upstream 51553 8971466 ~ 8978004 (+) False AMCG00015398
TU121754 lncRNA upstream 65439 8912014 ~ 8964118 (+) True G97640
TU121756 lncRNA upstream 67832 8912014 ~ 8961725 (+) False G97640
TU121770 lncRNA upstream 79477 8942424 ~ 8950080 (+) True G97650
TU121733 lncRNA downstream 31328 9067943 ~ 9072295 (+) True G97623
TU121874 lncRNA downstream 183221 9219836 ~ 9220284 (+) True G97737
TU121878 lncRNA downstream 186021 9222636 ~ 9223257 (+) True G97741
TU121883 lncRNA downstream 201218 9237833 ~ 9238342 (+) True G97745
TU121863 lncRNA downstream 284427 9321042 ~ 9321684 (+) True G97730
AMCG00015398 mRNA upstream 52470 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015399 mRNA upstream 63907 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015396 mRNA upstream 75873 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015395 mRNA upstream 99781 8926502 ~ 8929776 (+) True AMCG00015395
AMCG00015397 mRNA upstream 138236 8886176 ~ 8891321 (+) False AMCG00015397
AMCG00015406 mRNA downstream 20158 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015412 mRNA downstream 84789 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015413 mRNA downstream 91420 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015414 mRNA downstream 102589 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015416 mRNA downstream 118883 9155498 ~ 9175483 (+) True AMCG00015416
TU121758 other upstream 75882 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 75882 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 75882 8951793 ~ 8953675 (+) False AMCG00015396
TU121740 other upstream 136541 8828736 ~ 8893016 (+) True AMCG00015397
TU122193 other downstream 669482 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 720458 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 779103 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 892977 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 1048813 10085428 ~ 10086512 (+) False G98093

Expression Profile