RNA id: AMCG00015412


Basic Information

Item Value
RNA id AMCG00015412
length 1461
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00015412
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8797071 ~ 9124271 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccccccccccccgtgctCTGCGCATCTTCTCTTGTTGTGCGTgcgtcttgttttgttttgttttctggtttcaAACAGGTGAAAATCCTCTAAGCGAATTTTTTTCCAAACCTGCAAGAAATCTATCTAAAAGCAAGCTTGTGCTCTCGGATCAGTGAACTGGCCCTGTGTGCGAAGGATCTCTGGGGGAACCAAGGGGTGGGGAAAACTCTTTCCAGTCTTTCATTTCAGATGAACGCCACCTACTTATCTTGTTCCTAACCTGCATCCCCCTGCAAGTTGCTTTGGGAAGTTAAGTAGCATTCTTGGTTTTTCTGCTcatgtcatatttattttctgccccTTCCTTTCCCACAAATTGAGCCTAATGGAGCTAGTGTTAATGAGCATGCTTATCAACCTTTAAAAAGCCCCAACCAAAATGACTATAACCTCTGGGTAACCACATTGTAGTTCTTCTGCACTAAAGCTTCGCTCGAGCTTCCCAGATTTGTGTAACTTCTTAGCCTAAATATCCTCATGCAATTGTAGGTTTCTTTTGGGGCGGGGTGGGGTGCAacaatatcttatttttttccagatgcATCAACTTCGTATCGCTTAAAAACCTTCCTGGCCAAAGAGGCACCGTGCGTCTTGTTGCCCCCCTAGAggagtgtctctctctctctctttctctctctcaaatcaCTTTGACAggtcaaaaaacacaaacaccagaAGTTTCCCTAAACCAGATGCGACTGTAGTTGTGGACGTCGGAGTCTCTTGCAGTGTTGGGGaggggtgtgtttgtttggggttgCTTTTCACAGATCTTACTCTTCAGTCCCACGGTGTCCTTTTTCCCCCCCCGACTTAAAACTTGCAAAACAGGACAAGCCGTTTGGAGAGAGACTCTCGAGATCTCGGCGTGCAGCCACACCAACCGATCACACACACTCAGCGTCACTACTGCCTGGAGTGCAAGGCTCTCGCAGATAGTTTTGGCCAACCAGGTTGTGACTAGCGTCTGTCGGGGAGCAACGTTGCAGTGGTCAAGTCACCCCCATCTCGGGGAGGGTGGAGTCAGCCAGCCCGCACTGACCTGGGCCGAGAGGACAGGACCAGCGCACTGTgggcctcctgcagctctgacCCCGGACTGGACACAGCCTGGGGCAGCAAAAGTCTCCGCCCAGAAGTGAGCGGAGGCTAGTGGGAAAGGGGGCTTGATTTCAAATGAATCTGCTGGGTCAGTTCCTTGCCTTCACTTTATCTCCCTGCCCTCTGGGTGTTTTGAGGGCAAGAGCGTTGAGTGTGATTGTGCTTGTAtgggttatttatgtatgttgaGGTAAGGTGTGGGTGAAGGATTTTAGAATATATAATTAGACTTCAAAAGTGAATGTTTATATTTGAAAGCTTTGTACTTCTGTAGAgtaaggaaaatattttaaatgtataaatctatGAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121733 lncRNA upstream 49109 9067943 ~ 9072295 (+) True G97623
TU121804 lncRNA upstream 88619 9029717 ~ 9032785 (+) False AMCG00015407
TU121799 lncRNA upstream 91005 9024645 ~ 9030399 (+) True G97676
TU121783 lncRNA upstream 136496 8983502 ~ 8984908 (+) True G97663
TU121779 lncRNA upstream 143400 8971466 ~ 8978004 (+) False AMCG00015398
TU121874 lncRNA downstream 95827 9219836 ~ 9220284 (+) True G97737
TU121878 lncRNA downstream 98627 9222636 ~ 9223257 (+) True G97741
TU121883 lncRNA downstream 113824 9237833 ~ 9238342 (+) True G97745
TU121863 lncRNA downstream 197033 9321042 ~ 9321684 (+) True G97730
TU121911 lncRNA downstream 203627 9327636 ~ 9331026 (+) True G97770
AMCG00015406 mRNA upstream 57928 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015407 mRNA upstream 84789 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015398 mRNA upstream 144317 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015399 mRNA upstream 155754 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015396 mRNA upstream 167720 8951736 ~ 8953684 (+) False AMCG00015396
AMCG00015413 mRNA downstream 4026 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015414 mRNA downstream 15195 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015416 mRNA downstream 31489 9155498 ~ 9175483 (+) True AMCG00015416
AMCG00015417 mRNA downstream 134173 9258182 ~ 9261673 (+) True AMCG00015417
AMCG00015426 mRNA downstream 199546 9323555 ~ 9326614 (+) True AMCG00015426
TU121801 other upstream 88619 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 167729 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 167729 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 167729 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 237451 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 582088 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 633064 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 691709 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 805583 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 961419 10085428 ~ 10086512 (+) False G98093

Expression Profile