RNA id: TU121729


Basic Information

Item Value
RNA id TU121729
length 8443
lncRNA type read_through
GC content 0.46
exon number 4
gene id AMCG00015412
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8797071 ~ 9124271 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actgggtcagagcatctccaaaactgcagctcttgtggggtgttcccagtctgcagtggtcagaacctatcaaaagtggtccaaggcaggaaaagcagtgaaccgatgacagggtcatgggcggccaaggctcattgatgcccgtggggagcgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagttaatagtggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgNNNccgcagaccagtcagggtgcccatgctgacccttgtctactgccgaaagcgcctgcaatgggcacatgagcatcagaaatgGACCACGGAGCggtggaagaaggtggcctggtctgatgaatcacgagttgaaagtgttgaaaatgaaaaaatgaaattcaattgAAACGCTTGTTGAGTGCCTTTGAACCGACGAAAAGTGAGCGGTAgagaagcaacaacaaaatggcGCCGGGGTCTCTCCCGTAAACAAACCGCCATAGAGACATCCAGGAGATTGAAGATGAGAGGAAAGGAGCTcgtgttttgttaaattaagtccGAAGTACCGTCATTAGAAGTCAATTTCTGTGAATTGAAATTGAAGAATGAAGATTATGATGCGTAAAACACCACAAGGTCTTTAAGAGCAAGTTCAAGATCTGTAGTTAACGAAGAAATGAGAAACCGAGGCTTATTTTATTGAGGAGAAACTAAATCGACCCCCGTTAAAATGAAGACACAAAATGGCGGTCGGGGCCTCACCCTTAGAAAACGGGTCCAGATTGAAgatcttttgtttaaaaaaaaaaaaaatctaaatctgaagatctatatttatatatatatatatatatatatatatatatataatatatatataaacaactgGAACTTGAAGAGATTAGGATTGAGGTTTGAAGATAAAGGCacttacagaaataaagcaaaGCCTTTTATATATGAAGATTAGTCACAATCCACATTTGAAGCAAGATGTAGACGATTGAGGTTTTATTAAGTCTAACAAGCGACGaagttcatttacatttaatcaatgtgtttttttttttaagaagcaaCGAAGTTTATTTTAAGCTTTAAGTTTAAAGcccagggatttttttttttttttttacgtcaGTGCGTAATGCGTCACGTCGGCGTCTGTCGCGCAGTGTCTGGAGGTCAGGGAGTCGGGGCCGACGGGCGCCCCCTGGCGGTAGCGCAGGAGCAGCACTGTCAATGTGAGCCAGGAGGTCTCAGGCTATGGCAAGAATTGCATATCCAAGCACAAGATGTTTTATGGTCATGCTAACATCAGGGATCCAGTAGTGGAAGGCTAGTGTGCGCAAGGAATTGCCTAGcttcaggattttatttttattttattttttttatatataaatggacTATGTCTGAATGCTATTTGTGTAGCGAAGATTCTGTGAAGACTttgaagaggaggagaaaggaCTGAGATCACATGGGAGCGAGTTGGTTTGCAATGGACTTAGTCTGTAGCGGTTTCAGGAGGGGTTAACAGGACCAGGCAGGAAGAGCACAGGAGGAGCAGGATCGTAGAAGATGACGTAATTCCGGTAACGAGGACAGCGAGGGAGGGCAGCGGTTAGCGTCGAGGGTCTCGCCAGCCAGTCCAGGGCCATCGGGGTAGTCTTGTGCGCCAGGGTCCCAGCAGCGGGTGTGGCAGTGCAGTGAGATGAGCGGCCCAGTCAGAGCGAGAGACGGTCTGCAGTTAGGATCCCTCGTCTAGCCACTGATAGTCCGGGATAAAGAATGGGTTCTTGGGTTTGTATGGTTGGAGAGGTACACTGTAAGGTTtccaatttaacatttttatccCATAGCGCTGGAACACATTTGCTCGCGAagtcttctttctttttacagGACAAAGGTGTAATCGCTGAGTTTCTGCAGCCTGTGTGTGTCCCCCGTGTCGGGCGGTCCTGTTTGAGGTGTAATTCTGCAGCCAGTAATCTAGTCGTTGGGCTTCACTGTGTGTGGATGAGGACTGTTGATGGACTTCGGCTACCAGTCAGCTGTGTAGAGTGGCTCCATGCGCCTGTGTGCTGTGCGGCAGTTGCAATCGCCCCGTCCCCTAGGGTCCAGCTGGGTTTGGATTGGAGATGAAGAATCTGCCCCCTCCCCTTTTCTCCTGCCCTTCTTTGCAGCAGTTAAGTGCATCTGTAAACTCCAGCTGTCTTGTCTGAGCAATACTACTGATCTACAGGGAGGGAGTAACTATTTCCTTCATCTAAGACTTGCTGTGTAAATGTCAAATAATGGAGGGGAAGTAACTATTCCCCTCTAAAAACTTTACAACGGTTGAGGTTTAAGGCAGGGAGTCatgttcattttgtaaaatgcacTCTGAGGGAGTAACTATTCCCTCCCAGAAAAGATTATGCTGAATTTGGGAGCTCTTCCCTTTGTAACATGCACTCTGTAACTGACAGGGGAGTAACTATTCCCTCTAAAGCCTTAAATGAGGATTTGTTCTGGgagtaactttaaaaaaaaaaaaaaaaaaaaaggcaggaaCATCTTCCTACTGTAAATTGttctataaaaaaacaagttgtgGGCTTGTGGGGGAGGGATAAACTGCGGGGGTCTTCAGTCTTTTCTTCAACAGGTTCTGCACACTAGGCTCCTAAGAGATCAGTGGCTCCAGGATTGTAAAGGCATTTCCCCTCCCGGTCACGCCAGCTGGAGATCGTCCTGGGTAGCAAGGGTGTTTTAAACGAATAATGAATCTGTTCCAATCATTCGTCTCGGTTAGCCGCAGGATGGCAGCAGCTGAGAACCAGCCATTGTAGGCCAGGTATTTCCCCCTTGTAATACTGGTGAAGTTTGAGAGCAGGTGTGGCACTGGAATTTTGTCTGCAGTTTTAACTTTGAGCAACTCCCTTTTAAAGAAGCAGTGCAATGAGGGGTGTGTGAGTGGAGTAAAATGTGTGAATGTCCAGAGGGTGGGTTCTAGGTGTGTCTGCTCTGTGGATGTTCAGTGATGCTTGGTTGTGCCCCATAAGGACTATCTGAATCTAAATCCaaagggtggggggaggggttgggGTTAACATGAATCTCTTCCTAGACTTTTTGCAGCTCTTCTGTGTAAAGTGCAATGGCAGGATCGCTATCTGAGGCCTCAAGCCCACACTGGCTATGGGTACTGCAGAGGGACCCAGCGCAGTTAAAAGGGCAACGCTACTACATCCACTTCTTGTGAGGCAAGGCAGTTCTCCGAGCGCATAGTACCACTGCATCCCCTCGAGATGGCTGTGTGACGGCCCACCCCGCCCCCCGTAGCGTCAACCCATCTTAAAAAAGCTTGTGGAGGTCCCAGGAGATCGTCTCAAAAGATTTAgtcacaccccccccccacttcaaGGAAAACTGGTAAATTTGATGTACAACGGAATTCATGCGGTACAGATGATTGGGAGTGCTCAGGggaaaggggtgggggggtcctCTTACCTGTTAAAACACTCTTCCAGATGTATtcgttacaaaaaaaaaacacacaccaaagGAAAAGGAGGATTGATTGCGGCCTATTCGCCCCCCCCTCCTGCCCTCATCGCAGTGGAACACAGTTGGATCGTCTTCATCGGCGTTTTATGGAGGCATGtggcattttcatttaaagtcCCCGTTTAACTAGAGGCAAGTAACTAGCATTATGGAGTAGCTATCTGAGATGTGTGGAGTGGTCTTTACATTGTCTTGTAACTTCTGCACTTTGTACCTGTTGAGTTTGACTGAAAGGGGAAGTTTTGTCTGGTAGTGTAGTGTCTCCTCGGCGATGTCACTGTAAGGCTTCTTTGCCCATGAATGTTATCCTGGGGAGGGCTTTGCTGAATGATATGGGGAAGGGGGTAGGGTCTGTTTTTCTCTTGCCTTTTTTGTCTGCAGTTCCCCCCCCCTCTGAGTGCTTAAAACTCAAGATCAACAGAAGCTGTCAGCTCTAGCCAGTGTATGTAACCTTTAATTAATCCTCTTCAAGCCCTGAGAATTAACATCAGGAGAAAAAGGTATtcaaattgatttgtatttttccttccaattttaaaaagctgttggTATCATCTTGTGAAATAGATGCTCTGTAACTCTTGTCACTCATTTGGTTGCTCCGCAGTTTTGTCTGTAGCCTTGCAAGACCTCTTAGTCCTTGTCATGCGCCAGTGGAGATTTACTTTTTCTCcttgtaaatgtaaacaaactatTAAATTTCACTACAaaccaattttattttcttaataaatgcattatattttgaatgagTCTTTCTTTTGGTATGCATTTGTTCTCTGGGGAGGGTGTGGGtgttctcttgttttttttacctttttcagGTACTGGTATGTCAGCTTTGTAGAGCCTGCGATGACGGGCTCAGTAGCAACTCCTCGAAGGTGGAGTGAAGGCAGATAAGTCTTTCTGGTTCATGATTTTACACTGTCAGAAGCCACTCGGATGTGCAGCCAAAATAGCCAGCTGAAAGCCCATGCTGTGTGTAAAGGATCTCAGGAGGCCCAAGCCGCCCACTTATTCCCAATGCTCACAGATGCTCATTCTCCCAAGCCTTAAAGCAGTGATGTTGTCGGGGTCTTCTGGATCAGGAGGAGGGAAGTTGGAGTGATTTGGGTGGGGGAAGTTATGCTGCTGTCTGTCCTTCAAAAAGTTATCTTCACAGTGCGAGTGGACAAGCGCCCCAGCTCTTCAGTTACAAAGGATCCCCGGGGAACCTAAAGCCCCAGAGCTCATGCAGATAAGTCAATCCCAGGGTATGTTGTAAAGTGCTGAAAGGGGTGTCGCCTTTTAATGGGTGGGTAAGCACTGATTTTAGTTGGTTTTCCCTTTGTGGAAAGATGTGACTTGTTCTGTAATGTTTAGTCTTGGGGTGGGCAAACTTGGCAATGTAGTCTTACTGGTGTTATAGTGTGACTTGTCAGGGTGGGGAGGGTATTCTGGTTTGCTTTGGATCTTGCAGCCTAAGGGAAGAGAGGCACCCCCCAGGCGTGGCGACTCGGATCTCGATCCAGGAAGCGGCTGTCCGATGAGTCTCTCCTAGCCAGGCAGACAAAGGATTTTTCTCATTCCCCCCTACTTTAAAGGCCAAGTATTGATGAAGTCTTGTGGCTGTGGATATTCCCACCCCCTTAAAACCTCGGTTACTCTGCATCAGTGCAAATGTACTGGTGCTTTTGTTGAATGGGGCTGCTGTTGTGTGAAGGGGCAGTTTGGGTCTGGAAGGGTGAGTGTGGAGTAGTGACCGGTCAGTGCAACTGTGCGACCGGTTGTGCAATCCGGCGAGTGACCGAGGGGAAGCGGCGCCAATGCGTGGCTTCGTCTAAATTGCATGCTGGGCCATGCAACTGTGTGGCCTGCGCAGCATAGGTGAGCTGCGCAACTGTGCAGCCTAAAGCTGATGATTTAGATGTGCGACTGGAGGATGGGCTGGAGGTTTTGTGTGTCTAGATCTGTTCTCTTTTCAGAAACGCACTTTACGAATGGCATCACAAACGCGCTGCGCTCAAAAAGGCCTTGTGACGTCCTTCCCGGAGTATAGTAAGACACCGAGGTTACCTTTTGTAAGAGTCGTAACAGTCCGAGCACTGGAAGAGGCCGCTAGGATTTTAACTATAATGGTCAACTGTATTTGCCATCTTGTACTTCTGTGTGTTTGAGGTGAGGCTTTgaattttttcccttttcttttgtaTCGCCTGTCTGCAACACTTAAAGGGGAAACCTGTCCCCTGTCCCCCCATAGCTTTTTCAGTAGCCATTGCATCTCCCCTGGCTTTATGCCTTAATGGTTATGTATTGCTTCTGCATCTCCTTAACACATCTAACGTAGCACCATAGCTGTCGCACAAATCAATGTAGCGTATGTCCAAATGTGTGTGGGATGGGAGaggatgtgtgtttgtgggagttttgttttttccagatttcagctgtaaaccctcccccccttctccctctgGCAACTGCATTTCACGCGCACCCGTGTCTGAAGCAGTCGTCAAGCGAATGTCTCCGAATGAAGATTGCCCCGCCCACACTTCCCTCCTTGGTTCACCCGAGTGTCTGTGCTAATCTGCTGATTCACTGGAGTTTTGTGATgggatcccccccccccccgtgctCTGCGCATCTTCTCTTGTTGTGCGTgcgtcttgttttgttttgttttctggtttcaAACAGGTGAAAATCCTCTAAGCGAATTTTTTTCCAAACCTGCAAGAAATCTATCTAAAAGCAAGCTTGTGCTCTCGGATCAGTGAACTGGCCCTGTGTGCGAAGGATCTCTGGGGGAACCAAGGGGTGGGGAAAACTCTTTCCAGTCTTTCATTTCAGATGAACGCCACCTACTTATCTTGTTCCTAACCTGCATCCCCCTGCAAGTTGCTTTGGGAAGTTAAGTAGCATTCTTGGTTTTTCTGCTcatgtcatatttattttctgccccTTCCTTTCCCACAAATTGAGCCTAATGGAGCTAGTGTTAATGAGCATGCTTATCAACCTTTAAAAAGCCCCAACCAAAATGACTATAACCTCTGGGTAACCACATTGTAGTTCTTCTGCACTAAAGCTTCGCTCGAGCTTCCCAGATTTGTGTAACTTCTTAGCCTAAATATCCTCATGCAATTGTAGGTTTCTTTTGGGGCGGGGTGGGGTGCAacaatatcttatttttttccagatgcATCAACTTCGTATCGCTTAAAAACCTTCCTGGCCAAAGAGGCACCGTGCGTCTTGTTGCCCCCCTAGAggagtgtctctctctctctctttctctctctcaaatcaCTTTGACAggtcaaaaaacacaaacaccagaAGTTTCCCTAAACCAGATGCGACTGTAGTTGTGGACGTCGGAGTCTCTTGCAGTGTTGGGGaggggtgtgtttgtttggggttgCTTTTCACAGATCTTACTCTTCAGTCCCACGGTGTCCTTTTTCCCCCCCCGACTTAAAACTTGCAAAACAGGACAAGCCGTTTGGAGAGAGACTGTAAGTTTGACATCAGACTAGAAGTTACATTTTGTATCGTACACGTTTTAGTCCGCTTGAGACGGGCCCCCTTTCACCGAGACCGGGGTGTATCCACCCCTTGTTTCTAGATCAAGGGGAGTATAGTCTAATGTGTGGCAAGTTGCCATTTTTCAACTGGTATTCAATAGTCAAACCAGATTTAATCATGAACGTAGATCTTTAAGAGGTGAGGGAggtgggcgggggggggggtttaaaTGAACTTTCCAAGTTTTCTTCCAACAGCTCGAGATCTCGGCGTGCAGCCACACCAACCGATCACACACACTCAGCGTCACTACTGCCTGGAGTGCAAGGCTCTCGCAGATAGTAACTCTAAAATTCCCATTCTGAGTAACTTTTTAtacaaactaatttaaaatggttaaatatcTTTCTGAAGTCACTAAAACCATGCAGTGCTGGTTTGATTAAGCTGACTTGTAATATTGAAAGATTTTGAGCGTGAGACTGTGTGTGGATGTTTGTCTGCTTTCTATCTTTAAGAACACGTTGGCACACGCAGGAGAGGAGGCAGCGGCCGTACACTGACTTCAGTCACTCGTTTTGGCCAACCAGGTTGTGACTAGCGTCTGTCGGGGAGCAACGTTGCAGTGGTCAAGTCACCCCCATCTCGGGGAGGGTGGAGTCAGCCAGCCCGCACTGACCTGGGCCGAGAGGACAGGACCAGCGCACTGTgggcctcctgcagctctgacCCCGGACTGGACACAGCCTGGGGCAGCAAAAGTCTCCGCCCAGAAGTGAGCGGAGGCTAGTGGGAAAGGGGGCTTGATTTCAAATGAATCTGCTGGGTCAGTTCCTTGCCTTCACTTTATCTCCCTGCCCTCTGGGTGTTTTGAGGGCAAGAGCGTTGAGTGTGATTGTGCTTGTAtgggttatttatgtatgttgaGGTAAGGTGTGGGTGAAGGATTTTAGAATATATAATTAGACTTCAAAAGTGAATGTTTATATTTGAAAGCTTTGTACTTCTGTAGAgtaaggaaaatattttaaatgtataaatctatGAAAAAAAGCTTTGCAATGTAATTAGAATAAAATTTAAATGGAGAGGAAGCATTGGAAAAGCACATTACTTCTGTCCATTGAAAAGATACCCGAGCCACATCTGTCCCAGTGCAGAAGTTTGCCCACCTAATCCAGTGTTTCGGATCAGTGAAAAGTCCAGTTACCATGGGGTTGGAGGTCATTATGCCTGCTGTTGAACTGGGAGTGGTCATTTTGTTTAGGCTGaattctgtgttttctcagaaaataaaagtttttcttCCAATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121722 lncRNA upstream 6404 8789560 ~ 8790667 (+) True G97620
TU121726 lncRNA upstream 6404 8789690 ~ 8790667 (+) False G97620
TU121721 lncRNA upstream 11795 8784212 ~ 8785276 (+) True G97619
TU121720 lncRNA upstream 13080 8783746 ~ 8783991 (+) True G97618
TU121703 lncRNA upstream 18025 8777217 ~ 8779046 (+) True G97612
TU121874 lncRNA downstream 95565 9219836 ~ 9220284 (+) True G97737
TU121878 lncRNA downstream 98365 9222636 ~ 9223257 (+) True G97741
TU121883 lncRNA downstream 113562 9237833 ~ 9238342 (+) True G97745
TU121863 lncRNA downstream 196771 9321042 ~ 9321684 (+) True G97730
TU121911 lncRNA downstream 203365 9327636 ~ 9331026 (+) True G97770
AMCG00015382 mRNA upstream 44025 8748887 ~ 8753046 (+) True AMCG00015382
AMCG00015383 mRNA upstream 54586 8735961 ~ 8742485 (+) True AMCG00015383
AMCG00015381 mRNA upstream 65310 8729974 ~ 8731761 (+) True AMCG00015381
AMCG00015376 mRNA upstream 141962 8627771 ~ 8655109 (+) True AMCG00015376
AMCG00015377 mRNA upstream 184207 8608850 ~ 8612864 (+) True AMCG00015377
AMCG00015413 mRNA downstream 3764 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015414 mRNA downstream 14933 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015416 mRNA downstream 31227 9155498 ~ 9175483 (+) True AMCG00015416
AMCG00015417 mRNA downstream 133911 9258182 ~ 9261673 (+) True AMCG00015417
AMCG00015426 mRNA downstream 199284 9323555 ~ 9326614 (+) True AMCG00015426
TU121633 other upstream 109391 8686768 ~ 8687680 (+) True G97558
TU121580 other upstream 252289 8543324 ~ 8544782 (+) True G97513
TU121569 other upstream 263667 8529018 ~ 8533404 (+) True AMCG00015368
TU121387 other upstream 364951 8342493 ~ 8432120 (+) False AMCG00015365
TU122193 other downstream 581826 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 632802 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 691447 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 805321 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 961157 10085428 ~ 10086512 (+) False G98093

Expression Profile