RNA id: AMCG00015413


Basic Information

Item Value
RNA id AMCG00015413
length 1786
RNA type mRNA
GC content 0.64
exon number 14
gene id AMCG00015413
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9128035 ~ 9138925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCACTGCGCCCCGCCGCTGCCAACACACAGGTCTTCTATGTTTTGATGTCGGCAGCAAAGGAGGCGAGATGTGGTCCTTTTTCGCTCGGGATCCCGTCAAAGACTTTCCGTACGAGATCTTACCGGACACCCAGGAGCCGGCCGGGATATGGACTCTGCACCGGGGAAAGCGGAAGgtgacTGGGGAGCcggtgtcagtgtttgtgttcgAGCTGCGCCCTGGCGGCGAGGAGCAGATGGCAACGGACAAGTCTCTGTATGTGGTGACGGAGCCCGTGACCCCCCTCTCTGCCCACCTGAAGGCGCAAGCGGAGGCAGGGGGTGCCAAAGAGCTGGAGGTGTCCTGGGGGCTGCATCAGATCGTGAAAGCCCTCAGTTTCGTGGTGAACGACTGCCACCTGTTGCACAATGACCTGGGGCTGTGGTCGGTTTTTGTGGACCGTGCTGGGGAGTGGAAGCTGGGGGGGCTGGAGCACATGACATCCAGCCAGGGCGACGCCCTCCCCAGCAGGCGGCAGACACCTGACCTGGAGAACTTCGTGGAGACCAACCTGTTCCTGGAGGAGATCCAGaTCAAGGACCCAGCAGAGAAGCAGAAATTCTTCCAGGCTCTGAGTGACGACCTGGACTCGTTCCCTGAGGATTTCTGCCGGCACAAGGTGCTCCCACAGCTGCTCACCGCCTTTGAGTTCGGCAATGCCGGCGCCGTCATCCTCACCCCACTCTTCAAGGTAGGGAAGCTCCTCAGTGGGGAAGAGTACCAGCAGAAGATCATCCCAGTCATTGTGAAGATGTTCTCCTCCACAGACAGAGCCATGCGCATCCGgctgctgcagcagatgGAGCAGTTTATTCAATTCCTGAACGAGGCGGCAGTGAACTCCCAGATCTTCCCCCACCTGAACGAGGCGAATCTCAACATGGAGCTCATGCGCCACTTCGCCCGCCTGCAGGCCCGTGACGACCAGGGCCCCATCCGCTGCAACACCACCGTCTGGGCGGGCTGGGCCGTCACGGGGGTCTCATCCCTGACCTCCAAGCTCATCCGCACCGCCCCTGGGGCCGCAGAGGGGGGGGGTGCTCCCGACATCGCCCCTCCTACCCCCCCCTCCGCTGCCGCCACTGCTCCTGCCGCCACCGTCCCCGCCCCCGCAGGGTCCCCCCAGGACGGCCGGGGCCGAGGGTTTGAAACTCAGAAGGACACGCCCCGGCCCGCCCCTTCCACCCTCATTGACCAGTGGGCTGCCGCCAAGGgagtggaggaagaggaggagccaGTGAGCGACCGCTGGGAGGATGAGGATTGGGGGAGCCTGGAGGTGGGCGGGTCCTCCTCCACCGCCATGAAGAAACAGAGCTCTGATTGGAGCAGCTCGGGCTGGGAAGCGGATGACAGCTGGTCCAATGAGAAGGAGGCAGAAGGGCACAGTCAGAGCTCGCCGGGGGAGGAGGGCTGGGGGCAGGAGTGGGAGGACGACCTGGGCTCGCAGGGGGAGGCACCCTCGTCGTCGTCCGCAGCGCCCACTGCCACGGGCCCCCCACTGCCTGAGGGCACGAGGCCAGCCAGCGAGTATAACTGGGAGAGCGGGGCAGGGGGCGCCGTCGGGGGCTCCCAGACTGACTTCTTCTCTGGGATTTCACAGAGAGCGACCCCCGGGAACATgAAGAGTGAGGATACCTGGGGGGCAGACCctgggggggagtggggagCCGAGGACAACTGGGAGTCCCTGGAGGCCGATCAGGagagaggagaggaggaggaggaggaggaggaggagtag

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08876 SCYL1; SCY1-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121729 lncRNA upstream 3764 8797071 ~ 9124271 (+) False AMCG00015412
TU121730 lncRNA upstream 3764 8797071 ~ 9124271 (+) False AMCG00015412
TU121731 lncRNA upstream 3764 8797071 ~ 9124271 (+) False AMCG00015412
TU121732 lncRNA upstream 3764 8797071 ~ 9124271 (+) True AMCG00015412
TU121733 lncRNA upstream 55740 9067943 ~ 9072295 (+) True G97623
TU121874 lncRNA downstream 80911 9219836 ~ 9220284 (+) True G97737
TU121878 lncRNA downstream 83711 9222636 ~ 9223257 (+) True G97741
TU121883 lncRNA downstream 98908 9237833 ~ 9238342 (+) True G97745
TU121863 lncRNA downstream 182117 9321042 ~ 9321684 (+) True G97730
TU121911 lncRNA downstream 188711 9327636 ~ 9331026 (+) True G97770
AMCG00015412 mRNA upstream 4026 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015406 mRNA upstream 64559 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015407 mRNA upstream 91420 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015398 mRNA upstream 150948 8975342 ~ 8977087 (+) True AMCG00015398
AMCG00015399 mRNA upstream 162385 8964460 ~ 8965650 (+) True AMCG00015399
AMCG00015414 mRNA downstream 279 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015416 mRNA downstream 16573 9155498 ~ 9175483 (+) True AMCG00015416
AMCG00015417 mRNA downstream 119257 9258182 ~ 9261673 (+) True AMCG00015417
AMCG00015426 mRNA downstream 184630 9323555 ~ 9326614 (+) True AMCG00015426
AMCG00015425 mRNA downstream 209660 9348585 ~ 9355717 (+) True AMCG00015425
TU121801 other upstream 95250 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 174360 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 174360 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 174360 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 244082 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 567172 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 618148 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 676793 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 790667 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 946503 10085428 ~ 10086512 (+) False G98093

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015831 False 3267 mRNA 0.48 18 NC_007125.7 45575035 ~ 45595711 (-)