RNA id: AMCG00015416


Basic Information

Item Value
RNA id AMCG00015416
length 1257
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00015416
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9155498 ~ 9175483 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTGCTAGAAAGATCCTGGTCCGGCTGCAGAGCACTGGTCTGTATCCATCTGGGCATCGGACAGAATCAACCCAAACCAACTGTCACAGCTCTACAGGGGGACGAGCCCCCAGAGCGCAGAGAAATGAAAACGGAAGAAGAGGAGACAGACCTGTCTGGACTCGGCCAGCCCGTAACGCAGCTCAGTGACAAAGTGCTCGCAGTTCTTGGTGACTCTCACTCGCTGGTGTACATCTACACGGCTCTctcccagcccagcccagcaccCAAATTCTTACTGTCCACACTGTTCAATGGACAGATGGTGTCCCACTACGACAGCCACACCCAGAGGGACGTGGCCCGGCAGGCCTGGGTCAACAGCATCCTCAGCGCCAGGGGTTGGGGGGAGCGGGATTTCCAGGTGCTGCAGAGGCGGCGGGGCTGCAAGCTGGGGGATGATGGGAGTGTAGCGCTGTTTGATCAGTATGGCCTGGATGGACAAGACTTCCTGTCCTTTGAGGTGGGCAGCATGAGCTGGCTGTCCAACTCCCCCCAGGCCAAGTCCACTCAGAGGCAGTGGAACAGAGAGACTCAGCACAACCAGCGCATCCGAGCTGTCCTGGAGCGAGACTGCCTGGAGCAGCTGGAGACTCTACTGAATCACAGCGAGACACACCTGGCaaacacagCTGCCCCGGacgtgtttgtgtttgtgaagcaGCATGGAGAACTTCTGAACCAGTCCTTCTCCTGTCTGGCCACCGGGTCTGGATCGGCCACTCTGGAGCTTAGCCTGTACCGGAGTGGGCAGCGCCTGACCGAGGGGGAGTGGTCTAGCGGGGTGAGGCCCAATGGGGACGGCACCTTCCAGCTGAGGAAGAGCGTGGAGATCGGAGACAAGGAGGGACATAAGTACGCGTGTAACGTTACCTATGGCACTCAGAACAGCATTCGGAATGGCTCTCAGAATGGCACTTGGATCAGGGCTCAGAACCGCACCGCAGAGTTAGGTCAACCCAAAAGAGAGCACAACCAGGAAATCAATATAACCCTGTCTGTCACCCTGCCAGGAGTGCTGCTGgcCTGGCCCCACCAGATAGGTGTTCAGACTGTGGTGgcCAGTCAGTCTTCCCCACTGACTGAGGCCCCATACACAGCACCTCAGTCTGAGCCTCTCTCCACCCCCACCTCTACAGCAggGATCGACCGCCACAGCGATGGCAGGGGACCGTGCTCAGTGTCTGTGGATCACCAGCTCCCCATCCTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121729 lncRNA upstream 31227 8797071 ~ 9124271 (+) False AMCG00015412
TU121730 lncRNA upstream 31227 8797071 ~ 9124271 (+) False AMCG00015412
TU121731 lncRNA upstream 31227 8797071 ~ 9124271 (+) False AMCG00015412
TU121732 lncRNA upstream 31227 8797071 ~ 9124271 (+) True AMCG00015412
TU121733 lncRNA upstream 83203 9067943 ~ 9072295 (+) True G97623
TU121874 lncRNA downstream 44353 9219836 ~ 9220284 (+) True G97737
TU121878 lncRNA downstream 47153 9222636 ~ 9223257 (+) True G97741
TU121883 lncRNA downstream 62350 9237833 ~ 9238342 (+) True G97745
TU121863 lncRNA downstream 145559 9321042 ~ 9321684 (+) True G97730
TU121911 lncRNA downstream 152153 9327636 ~ 9331026 (+) True G97770
AMCG00015414 mRNA upstream 16049 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015413 mRNA upstream 16573 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015412 mRNA upstream 31489 9121404 ~ 9124009 (+) False AMCG00015412
AMCG00015406 mRNA upstream 92022 9056773 ~ 9063476 (+) True AMCG00015406
AMCG00015407 mRNA upstream 118883 9029557 ~ 9036615 (+) True AMCG00015407
AMCG00015417 mRNA downstream 82699 9258182 ~ 9261673 (+) True AMCG00015417
AMCG00015426 mRNA downstream 148072 9323555 ~ 9326614 (+) True AMCG00015426
AMCG00015425 mRNA downstream 173102 9348585 ~ 9355717 (+) True AMCG00015425
AMCG00015428 mRNA downstream 181480 9356963 ~ 9379060 (+) True AMCG00015428
AMCG00015427 mRNA downstream 208191 9383674 ~ 9387025 (+) True AMCG00015427
TU121801 other upstream 122713 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 201823 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 201823 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 201823 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 271545 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 530614 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 581590 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 640235 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 754109 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 909945 10085428 ~ 10086512 (+) False G98093

Expression Profile