RNA id: AMCG00015425


Basic Information

Item Value
RNA id AMCG00015425
length 3859
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00015425
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9348585 ~ 9355717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTCATGTGCAGTGCCCGGGTCCTGCTGCCACGGCCCACAGAACTCCACTTCCCAGCAGCCCCCGCGGCGCACTGAGACACTACAGCTCCCAGCGTGCACCGGGCGCCCGGATCCGAACGCGGCGAGAGCGTGTCTGCGCAGGGGACCGATTGGCGGCAAAAGAAAGAAACGGGACAACCGGGGGGTGAGAAACAAAACGGCCGCCGGGAAGCTGAACAGCAGCTACCACGACAGCATGACGGTCTGGCTGTAGAAGGAGACTGTGTGCACTTGGGAGCCACACTAGTGGAAGTGGGAGGCACAttcagagagagtgagagtgggTCAAGAGTgtgaggagaggaggagaagaggcgGACAGCAGTCGACGGAGCTCCAGTCATGGGTTTGCGCTCGTCTCAGAAGAAGCATTTCCCCCTGCGGGGGATCGACGGTGTGGTGCAGCTGTTCGACGCTGAGCTGCGGCGGGCCGAGCCAGACCTGTCCCTGTTGTCCCTGGTGCTGGGCTTCATCGAGCACTTCCTGGCCGTCAACCGGGTTGTGCCGGTCAATGTGCCCGGCGTCCGCTTCGAGCCCCTGGACCCGGGCAATCCAGCGTCCTGCTTCCCCGTGGTGGAGCTGGGCATGGTCTCGGCCCTGCATGAGCGCTTTACCGCCCAGATCCGCGGCGCCGTGGACCTGTCGCAGTACCGGCGCCCGGGGGGAGGCTCGAGCCGGGAGCTGGTCAAGAAGGTGTCCGATGTCATCTGGAACAGCTTGAGCCGGTCCTACTTCAAGGACCGGGCGCACATCCAGTCTCTCTTCAGCCTCATAACAGGCACCAAGCTGGACAGCTCTGGGGTGGCCTTCGCAGTGGTGGCGGCCTGTCAGGTCCTGGGGCTGCAGGACGTCCACTTGGCCCTCTCGGAGGACCACGCCTGGGTCATTTTTGGGAAGAACGGGGAGGAGACGGCCGAGGTGACCTGGCACGGCAAGGGCAACGAGGACCGGCGTGGGCAGACAGTCAGCGCGGGGGTCAGTGAGCGGCAGAGCTGGCTGTACCTGAAGGGGTCCTACCTGAAGTGTACCCGGAACATGGAGGTGGCGTTCATGGTGTGTGCCATCAACCCGTCGGTGGACCTGCACACGGACAGCACCGAGctcctgcagctgcagcagAGACTGCTGTGGCTGTTGTATGACCGAGGAGACCTGGATAGATACCCTATGGCTCTTGGCACCCTGGCTGACTTGGAGGACTTGGAGCCCATCCCTGGCAGAGAGACCCCACTGGCGCTCCACGAGAAGGCCATCAACTCGGCCAAGGTTTACTACAATAACGAGCACATCTACCCCTTCATGTACCTGGCCGGCTTTCACTACCGGCACCGGAACGTCCGGGATGCGCTGGGCGCCTGGGCCGAGGCCGCCTCCGTCATGCAGGATTACAATTACTTCCGGGAGGACGAGGAGATATACAAGGAGTTCTTTGATGTTGCCAACGACGTCATCCCCACACTGCTGAAGGAGACGGCGGCGGAGAGCTCCGGCGACGGTGGGGGCAGCAGTCCGGACGGGGTAGAGAAGATGTCCCCCCAGCCATCGGGCCCCACCGTATCGGCCCTGCAGGACTCAGAGTGCTTCGCCCACCTGCTGCGCTTCTATGACGGCATCTGCAAGTGGGAGGAGGGCAGCCCCACCCCAGTGCTGCATGTGGGCTGGGCAACCTACCTGGTCCAGTCTCTGAGCCGCTTTGAGGCACAGGTGCGTCAGAAGGTGTCCATCATCACCAAAGAGGTGGAGCCCCCGGAGGACGACGACCAATCCAGTGAGGACCCCCGGGAGGGCCGGCGACGGGGCCCCCGCCGAGAGTCCAAAGCCGAGGAGCCTCCCCTGGGTGCCCCCGCCCAGGCCCCGCCCAAGAAGTTGACCGGGGAGGGGGCGGTCCGGCGGCGCTCCTTCCCAGGGGTCCGggccgagggggaggggaagTCTGGCGGGGCGTCGCCCAGTCCCACCCCAACCCCGGCCCTTCCCCCCGGCCCGGTGGTGGCCTTCCACAGCGAGAAGATGAAAGGCATGAAGGAGCTGCTGTCGGCCGCCAAGATCAACTCCAGTGCCATCAAGCTGCAGCTCACCGCGCAGTCACAGGTGCAGATGAAGAGACAGAAGCCCAGCACCCCCGGCGACTACACGCTCTCCTTCATGAAACGCCAGCGCAAGACCCTGTGACGGCCCCTGTGGGGGGGAGGACAGACTTCCCGGGGTCCCCAAACTCCCCACGCTGGCATATTATGATTCTTATAAGAGGGTATCGCTTTCACCCATGTGACCGGGGTTCTGTCACGAGCCACCCGGAGCTCCACTCATCCTTTGGGACGTGGTCTAAAATTGTTACCAACGTGAGGGTGAGTTTGTCACGTGACCCCAACACCAGCACTGCAGTGATGTCATCAGCAAGTGCCCAGAATGCCTAGGAAGAAAGCCAAGAATTTGTCCATTGTGGGATGCTATAGATCTTGGGGTACGCAACTCCCCAGGTTGACTTCCAGTCccgttttaatttaaatacagctGTATTTCCTACATCTGACTGGGGCGTCCTTTCGCAAGATGCAGGCTGAACAGCTCTATAGACGatggcttaaaaaaaatgtacataaggATCAAGTTATTCACTTTAATGTGAGTTTGATAGTGACATCATCAACAAGCGCCGGGTAGCCAACTTTGACAGTCCTGTACACAGTGGACAAAACGGAGGGATGAGCACAGGTTCAGAATCATTCCGATGCTTCCATCACCTTCAGTTCACAGGGAGAGGAGTCGGGCCGCCCGCAGGTGTATCGGCACCGATTGTTCAAGGGGAGCAGAGGTCAGCCTGGGGGCCTTCACGCACCGGGAGCTGTTGTCCCCCACCCCATTCCGTTAATTGAGAGGGATTACGAGGATTCAAGCAGCAAACTTGTGCAACGGCGCAAGTTTTTTTACTCTGAGAACAATCAAACGAGATCGGGACCAGAAGCCGTCCCGGGGAAGTTCAGGGCACCGGACActcctgtctcctgtctcctgtctccCGCATCCACCACCACACCCCCTTCACCAGTTTATTCACCGCAGATTATATTAAATTACCTTTCTTTCGTTGGCACCCCTGCTTCCAAAATAAGGCTCAGTCACGGACgcacaaccccccccctccatgTCTTTCCACTCCTGCACCAGCGTGCGGGGGTGGCTTTTggatggggagggaggggtTGGGAAGCGGGGGTCTGTCTTGTATCCGTTATCCGCTGGTGGAGATTCAGCAGTCTTGTCCACTCCAAATCTGGTTGTCGTCATCGTTTGTGTGtgcctgtatgtgtgtaatatatacacacccaAATCTGTGTCTTCCCTAGGACTACCTCATGAGACTAACCCAATGTTACCCACCTCTAAGAATGACATGGAATACCCAGGCCAGTTCCCCGATTTATAGATTTAAACTTCTCGAACATAAACCATCAATTCCAGTCTCCCGATTTTATTGGTCTGTAAttaattgtagttttattttttttatttttcccgtTCATAATTTCCAATGATCTTTCTCCGTTCCTCTGCTGCCGCCTGGCCCTCTGAAGCCAGCGCATCTTCCCTGTTGGATctcttcacccccccccccccccccccccccccccaccacagttGTGGCTCAATGCGAACGTGGGCGGCCCGGGCTCCTCTGTACCACGGGGTGGGGAATGGAGGCTGGATTTTAAGTCAGGACCCGGGGATGTGTGTGTGACGCAGCTTGTGTGTTTAAGTTTAAGgcttttaagtgtttttttggttgtcttgtttctgtttttttttttaaataa

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K14970 MEN1, MNN1; menin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121919 lncRNA upstream 1341 9345762 ~ 9347244 (+) True G97777
TU121911 lncRNA upstream 17559 9327636 ~ 9331026 (+) True G97770
TU121863 lncRNA upstream 26901 9321042 ~ 9321684 (+) True G97730
TU121883 lncRNA upstream 110243 9237833 ~ 9238342 (+) True G97745
TU121878 lncRNA upstream 125328 9222636 ~ 9223257 (+) True G97741
TU122162 lncRNA downstream 273422 9629139 ~ 9631892 (+) True AMCG00015445
TU122181 lncRNA downstream 299751 9655468 ~ 9657866 (+) True G97989
TU122191 lncRNA downstream 347119 9702836 ~ 9703109 (+) True G97998
TU122192 lncRNA downstream 350007 9705724 ~ 9706036 (+) True G97999
TU122221 lncRNA downstream 403855 9759572 ~ 9760688 (+) True G98025
AMCG00015426 mRNA upstream 21971 9323555 ~ 9326614 (+) True AMCG00015426
AMCG00015417 mRNA upstream 86912 9258182 ~ 9261673 (+) True AMCG00015417
AMCG00015416 mRNA upstream 173102 9155498 ~ 9175483 (+) True AMCG00015416
AMCG00015414 mRNA upstream 209136 9139204 ~ 9139449 (+) True AMCG00015414
AMCG00015413 mRNA upstream 209660 9128035 ~ 9138925 (+) True AMCG00015413
AMCG00015428 mRNA downstream 1246 9356963 ~ 9379060 (+) True AMCG00015428
AMCG00015427 mRNA downstream 27957 9383674 ~ 9387025 (+) True AMCG00015427
AMCG00015434 mRNA downstream 43713 9399430 ~ 9401380 (+) True AMCG00015434
AMCG00015433 mRNA downstream 60166 9415883 ~ 9435428 (+) True AMCG00015433
AMCG00015432 mRNA downstream 84711 9440428 ~ 9442795 (+) True AMCG00015432
TU121801 other upstream 315800 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 394910 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 394910 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 394910 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 464632 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 350380 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 401356 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 460001 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 573875 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 729711 10085428 ~ 10086512 (+) False G98093

Expression Profile