RNA id: AMCG00015435


Basic Information

Item Value
RNA id AMCG00015435
length 2578
RNA type mRNA
GC content 0.59
exon number 15
gene id AMCG00015435
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9572868 ~ 9585537 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAAATCCCtaccctctctctccttgctCTCATTCCCTCTCTGGCTCTCGGGCTATACTGTACACCAgctcagacagacacagaggcaCCCCCGGGAGAGAGACTCTGACTCCTGCCACCGTCACCACATGACTGTTGGTGTTTAGGACTTTTTTTACCCCTGCATCCCGGCGGAGAGATGGGAGGCGAGAGCGAAGGGAAGAAGAAACGGGCCTTCTCTGAGAAGCGGCGAGAGAAGTCCCGGAACGCGGCACGGAGCCGGCGGGGCCAGGAGAGCCAGATGTTCGGCGAACTGGCGCAGCAGTTGCCCCTTCCCCCAGGCACAGCCACCCACCTGGACAAAGCATCCGTGGTGAGACTGACCCTCAGCTACCTGCAGCTCCGAGCCCTGCTGGACGAAGCCGAGACCCCGGGCTGGGCATCCACCAGTGCAGAGATCGAGACCCAGGCCTCCGCAGAGGGCGCTGGGCCGGGTCCAGGTGCTGATGGGACATCCTGTGTGGAGAGGGTGCTGGGCACGGCCCTGGAGGgcttcctgctgctgctgtccccGAGTGGTCAGGTTGTCTACATCTCAGAGGGTGTGAGCCAGCACACAGGCATCCCCCAGATGGAGCTCATTGGCCAGAGTGTGTTTGAGTTCATCCACCCCTGTGACCAGGAGGAAATTAAAGATATTCTGAACTTCAGACAAGAGACCAGGGGTAAAGCAGAAAAGCAGGACTGCGATTTCTTCACCCGGGTGAAATGCACACTGACCTCTCAGGGGCGGACGGTCCACCTCAAGTCAGCCTCGTGGAAAgtgCTGCACTGTACCGGAGTGGCGAAGGTACCCCAGGTCACCATCAATAACCTCCCTGGCTACCTGATCTTATTGTGCCAGCCGGTGCCCCTGCCCAGTGCCAGCGATGCAAGTGTGAACCGCCACGCCTTCCTGAGTAGACACAGCCCAGACATGAAGTTCACCTACTGCCAGCCCAGTGTCACGGAGCTGACAGGCTACTCGGAGGGAGAGCTGCTGGGCCGCTCGGTGTTCCAGTATTGCCACGCGCAAGACTGCCGGCGCATCCTCAAGGCACACCATAACTTGTTCTCCAAAGGTCAGATGTCCACGGGCCGCTACAGGCTGCTGGCACGGAGGGGGGGCTACGTGTGGGCGGAGACCGACGCTACGGTGGTCTGCGACGAGCGAACAGGACAGCCCCACAGTGTCCTCTGCGTCAACTACATCCTCAGtGAGCCGGAGGAATCGGAGGTGACCTTCTCCCTGGAGCAGACAGAGAGCCTGTTCAGACCCTGCCCAGCCCACGACACTGATGCCTTGGCGCCTGCTCCTGTCCCCACCCCCCTGCTCGGCCCGACCCAGGTCCCGGAAAGCAGAGCACAAGTGCGATGTGGCCAGGGTAGAGGGTATATGGGCTCTACTGGGTTCGCTGGGGAGAGCTGCTTTCCTGCAGAATACACAgagacAGATCCCAGAGATGGGGGGGCCAAGGCAGCCATTGTCTCTCTGATGGAGAGACTTCTGGAGTGGGACAGCGAGGGAGGGCTCCAGAAAAAAAACCAGGAGAACCACAATGAGCTGGACCTGGACTCGCTGGCCCCCTACATCCCTATGGACGGAGAGGACTTCAAGCTCAGCCCCATCCCTGAGGTAGCGGGGGACCGGGGGGCCCTGGGACCTGGCGACGGAGCAGAACTGGGCCCTAGTCCTCTCCCCAAGTCCTCGTGGGAGTTGCCAGACAGCAGCTACAGGGGCCTAGCTGTGCCTGGTGAGGAGACCCCCTTTGCACCCCCTCCTGTTCCCAGAGCTCAGCAGAGAGGGTCACTGCAGATGTCTGACATCAAAGACCCCTCCCACCTCGACCCCCGCCAGCCCCAGCCACATCTCATGGCCGCACAGCCCAGTGAACGGGCAGAGTGCTGTTGCCTTGGGAAGCGTTGCACAGCAGAGGTTGCCCAGGAGATGCGTGGGTGGCAGAGCAGGCACCAGAAGAGACACTGGAGGGAAGAGCAGCCCGGGCCCCTCTGGAGCTGTAATACACAGGTACTGCAGACCCTGAGTCAGAACTGTGTGGCCATAGAGCAGGAGACTTGGGTTTTAGATGGCAGTGCCCCCCTGTGGAAGAGAATGAAGGTGCCTGGGGAAGTGAACCTGCAGAGTTACATCACGCAGGGCCGGAGACGAGACCCCTGGAGTTTAGACTGGTCAGCGGGGAGTGTGTGTCCAGCGTTGCCTGTGTTGACGCGGTGGGAGTGCGAGGTCAATGCCCCGCTGAGCACAGCCTCCAGTCTGCTGCATGGCGCCGAGATCCTCCGCGTACTGGACCAGGCCACCTCCCACCTCGGCCCGGAGCGGCTGGGCACTGAGTGAGGACCTGGCGCTGCGCTGACAATGTTTAGAATTTGGATTGGATTTGCCTGAGGAAAATAAACTGGGCTTTTTGTTCagctttaatatttgttttttccccttttctgtACATTAATCTGACCAGGTTTTGGTAGCGTTTTATGTATCtattgtttatacatttgtattttttatgtatttgtgtaacaAGATGTGACTTTTG

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0045321 leukocyte activation biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko04062 Chemokine signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121919 lncRNA upstream 225624 9345762 ~ 9347244 (+) True G97777
TU121911 lncRNA upstream 241842 9327636 ~ 9331026 (+) True G97770
TU121863 lncRNA upstream 251184 9321042 ~ 9321684 (+) True G97730
TU121883 lncRNA upstream 334526 9237833 ~ 9238342 (+) True G97745
TU121878 lncRNA upstream 349611 9222636 ~ 9223257 (+) True G97741
TU122162 lncRNA downstream 43602 9629139 ~ 9631892 (+) True AMCG00015445
TU122181 lncRNA downstream 69931 9655468 ~ 9657866 (+) True G97989
TU122191 lncRNA downstream 117299 9702836 ~ 9703109 (+) True G97998
TU122192 lncRNA downstream 120187 9705724 ~ 9706036 (+) True G97999
TU122221 lncRNA downstream 174035 9759572 ~ 9760688 (+) True G98025
AMCG00015436 mRNA upstream 73889 9473172 ~ 9498979 (+) True AMCG00015436
AMCG00015437 mRNA upstream 107112 9464324 ~ 9465756 (+) True AMCG00015437
AMCG00015432 mRNA upstream 130073 9440428 ~ 9442795 (+) True AMCG00015432
AMCG00015433 mRNA upstream 137440 9415883 ~ 9435428 (+) True AMCG00015433
AMCG00015434 mRNA upstream 171488 9399430 ~ 9401380 (+) True AMCG00015434
AMCG00015444 mRNA downstream 36195 9621732 ~ 9624582 (+) True AMCG00015444
AMCG00015445 mRNA downstream 39052 9624589 ~ 9629786 (+) False AMCG00015445
AMCG00015443 mRNA downstream 57585 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015450 mRNA downstream 111763 9697300 ~ 9702772 (+) True AMCG00015450
AMCG00015461 mRNA downstream 187037 9772574 ~ 9810428 (+) True AMCG00015461
TU121801 other upstream 540083 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 619193 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 619193 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 619193 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 688915 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 120560 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 171536 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 230181 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 344055 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 499891 10085428 ~ 10086512 (+) False G98093

Expression Profile