RNA id: AMCG00015436


Basic Information

Item Value
RNA id AMCG00015436
length 4319
RNA type mRNA
GC content 0.59
exon number 26
gene id AMCG00015436
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9473172 ~ 9498979 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGGACAGGGAAGGAAGTGGCCGGGGGCGGTGGGGGAttccacacacagcagctccaGGCCCGTCTGCTGCCCCGCGCCAGGGCCAGAGCACCACCGCTACCAACGCTGCTGCCCCCAGGCTCTGCtgGTGTGCCCCCTCACCTGCATGAATGGGGGCCAGTGCAGCTCCCGCAGTCACTGCCTGTGCCCTCCTGGCTTCACTGGGCGGCTCTGCCAGTTCTCTCTGCGGCAGGGTGGGCAGGGCGGGCAGGGGGCGGTGAGCGCTGGGGGTGGGGAGCAGGGCCCCGTGGGCAAACAGACCCTCTACACCCTGCAGACCAAGCCACCCCACAAGCCCCCGACACGCCTCCCGCCACAGACGCACAAGCCCAGGGGGCGGTGCTTCCAGGAGACCACTCCCAAACAAGCCTGCAGCAGTAACCCGCTGCCTGGCCTCACCAACCAGGAAGATTGCTGTGGCAGCATACAGGAGCCCAAAAGACAGGCAGACTCTCCCGGAGAGACCGGCCCCTGCTACAGGATGGTGACGGAGCAGGATCAGTGTGAGCACGCCCTGCCCACCCAGCTCTCACAGGAGATGTGCTGCTGCACGGTGGGAAAAGCGTGGGGCCAGGGCTGTGAGAGGTGCCCGCAGGTCGGGACAGCGTCCTTCTCTAAGATCTGTCCTGCGGGCAAGGGGTACATCTTCCAGAGTTTCCGCCAGACCCTGTCCTTCCCGCAACACGTCTTCCCGGACGAAAAGAAAGgtgCCCAGACGGGAGGAGCCGGAAGTGACCACGCCAGCCCAGCCGCCCACCACCACCGCCCCCAGTCCTCGGTACCCAGACCCACCCCCCCCACGATCGAAAAAGTTCCGCCAGAGACGGACATCAACAGTCCCATGGAGATGTCGACGCAGATGGCGCAAACGGACGCGTGCCGACAGAACCGGAACATCTGTGGCCATGGCGAGTGTTCCAACACCTTCAACGGATTCATCTGCCACTGCTACACCGGTTACCGGTTCAATCCCCAGAAGAAGTACTGCATGGACGAGAACGAGTGTGAGAAGGAGCCCTGTGGACCAGGGAGGGGCCTGTGCATCAACACCGTCGGTTCCTATACCTGCCGCTGCAACCATGGCTACAAGCTGGGCAGCCACAACAGGATGCGCACCTGTGTAGACGTGAACGAGTGTGCCAAGGACAACAGCTGCGGCGAGAGCGGGCGCTGCGTCAACCTGCCGGGCGGGTACAGGTGCGACTGCTACGAGGGGTTCAAGAGCAAGTCGCCCCGCCACCCTGCCTGcgaggATATCGACGAGTGCCTGGACCGCAACACCTGCCCCAATGCGCAGTGCGAGAACACCCCCGGCTCCTACGAGTACATCGATGAGTGCCTGGACGAGCGGCTGTGTGCCAACGGGAAGTGCAACAACACCCTGGGCTCCTTCAAGTGCCTGTGCCACCCAGGCTTCCAGCTGACTCATGAGGGCAGCCACTGTGAAGACACGAACGAGTGCGACTACGCCATCAACTGCCAGGGGGGGGACTGCATCAACACTCACGGCTCCTTCCAATGTGAGTGCGGCAAGGGCTTCAAGCTGGAGAACAACATCTGCAAGGACATCAACGAGTGCGCCCTGGACAGGAGGCTCTGCCAGCCCCATGGCTTCTGCGAGAACAGGAAGGGCTCCTATGTCTGCGTGTGCCACAAGGGGTACCGGCCCTCCGAGGACCACCACAGCTGTGAGGAAATCGAAGTGGACCATGATGACAAGAGGGAGTGCTATCTGGACATGGATGACACGGTGTTCTGCGACAGCGTCCTGGCCACTAACATCACCAAACAAGAGTGCTGCTGCTCCATCGGCGTGGGCTGGGGGGACCACTGCGAGATCTACCCTTGCCCCGTCCACAACTCCGCGGAGTTCCACTCGCTCTGTCCCACTGGGAAGGGCTTCTACCACGAGGAGAGAGTGACCACTTACGGGCTGCCCATGCACAGAGATATCGATGAGTGCGTTCTGTTTGCCAACGAGATCTGCAAGGAGGGCCGCTGCATGAACACCCAGCCTGGGTACGAGTGCTACTGCCAGCAGGGCTTCTACTATGACGGCAACCTACTGGAGTGCATCGATGTCGACGAGTGCCacgacaactctctgtgtgccAACGGGCGCTGCGTCAACACCAGGGGCGCCTACTACTGCAACTGTAACCCCCCCTGGATCTCCGACGTGTCCGGCAAGAAGTGTGTGATGCCCGATGTGGACGAGTGCCAGGATCCGGCCAACTGCAAGAATGGGCGCTGTGTGAACACCCAAGGTTCCTACTACTGCATCTGCACCCTGCCCTGGACCCTGGCTACCGACCGCAACAGCTGCATCCCCCCCGAGGAGCAGGGTGATGTGAATGAGTGTCAGGACCCCTCCTATTGTAAGAATGGAGTGTGTATCAACACGCCCGGCTCCTATCACTGTCTCTGCAGCCAGCCCTTCACCTTCAGTGCGGCGCTCAAACAGTGCGTGTACGACGACCGCACCGCTGCCCACAAGGATGTGTGTTTCCAGCGCGTGGATGAGGGCCTGATCTGCAGCGGGCCCCGGTCGCAGCTCGTCACCTATTCCACATGCTGCTGCCACTTCGGCAACGGCTGGGGCCCCGAGTGCCGCACCTGCCCAGAGCGCAACTCAGATGTCTTCAATCGCCTGTGTGAGATGCATGTTGATACAGAGTCCGATGGGGAATCGGAGTTCTTGCCGGTGTATGTCGATCATAACCCAAGTGAGTTCGAATTCATCCCCCCACCCTCTGAACTCTggccactccctctctcccttcctccatACGTCCCGCCCCTGTCGGCCTGCCTGCCAGTCTGGCCctgctgtctgtctccctgcctCCATCCCATTTTCCTCCCCACCTTCCTCCCTTCCTGCCCTCTCCCCGGGCGTCTCCTGCTGTCTCTCGCTCCGCCCCTTCCTCCATCTCACCCCGTCTCCACTCCTCCTCCCCCCGCAGCCGACAGCTCCGAGGAGGACTCGGACGAGTGCACCTGTGTGAACGGCCACTGCGAGCGCGCCTACCTGAGCCTGACCTGCAAATGCAACCAAGGCTACAGACTGGACCAAAGCCGGACTCGCTGCATCGACATCGACGAGTGCACCGAGGTGATCACGCGGCTGATGCCATGCAAGAACGCCCATTGTGTCAACACCCCGGGCTCCTACAAGTGCTTCTGCAAGAGCGGCTTCTTGCCCACGCGCCTGCCCAACATCTGTTTGCGCCCCCGATCCATGTAGCACCGCCTCCctgactcacacacagaaattcagacactcacacacacacactgtcactagACTCTTGCCTTCTAAAAGACACTAGTTTCACCTCCTATGCTGCCTCACACGCATAtacccctccccacccccacctctcaGCAATCTGCTCTCCCCCCCCACTCACTATTCCCCCCTCCCAGTATTAGTGCAATCTGCAGCGTTTGGCAAACCCCACCCACCTCATCTTTTCCAGCAAGTTCTGTCGCTCCACACCGAATTTAGGGATCATTATACTGCTGCATCCTCGGGGATGGTTAGGGCtttgtcacattttttttttctttttgtgtattattattttctgattgtttttcatttttggggggttgggAACACTCCACCAAGAAAATCCCCGAAAAGAAACGCACACAAAGTACAGACCCCTTGTGTAAAACAACCAGTCCCCACGAGTCTGTGCTGGCGGTCCAGCTTGGGCCTCTCCAACAGCCAACGCTCTTCTTCCACCGAACTCAACTACGCGCCACGCCGTGCTCGGGGGTCCGTGTGAACCACAGAGCCGAGCCCAGACAGGAATGACCTCAACAATGACGGGACGCCCTCGTGAGTCCGATTCGTCTTTAGGGTCAAGCTCACTCTCCCACAATTTCTCGTTGTGCGGAGAAGACGTGTGCGTGACGTACCACAGCAAACGTACAGGGGGACCGAGGTACCGCACAGAGGTTCGAGAGCAACACAACGCATGGCCAACGCTGACCCTCTCCTGCCGTTTCTGCCATTGTCTCTTGGCGTTGCACACAAGTCTGCTGGAGGAAAGTATTTATCTTTGGgacagaaaaaagtgaaaacctGATTGTTGAATCTAAAAgggcattttttgtttgtttgtatatgtttttgttatcattaattttttttttcccgctCTCTCACTCTGTCGGATTCCCCCCCTGGTTTTGTAACTGACTGTCAGACTTGCACTTTTTCGTCTGTGGACTTGCCATTAAATTATGTCAAAATATACAGGA

Function

GO: NA

KEGG:

id description
K08023 LTBP2_3_4; latent transforming growth factor beta binding protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121919 lncRNA upstream 125928 9345762 ~ 9347244 (+) True G97777
TU121911 lncRNA upstream 142146 9327636 ~ 9331026 (+) True G97770
TU121863 lncRNA upstream 151488 9321042 ~ 9321684 (+) True G97730
TU121883 lncRNA upstream 234830 9237833 ~ 9238342 (+) True G97745
TU121878 lncRNA upstream 249915 9222636 ~ 9223257 (+) True G97741
TU122162 lncRNA downstream 130160 9629139 ~ 9631892 (+) True AMCG00015445
TU122181 lncRNA downstream 156489 9655468 ~ 9657866 (+) True G97989
TU122191 lncRNA downstream 203857 9702836 ~ 9703109 (+) True G97998
TU122192 lncRNA downstream 206745 9705724 ~ 9706036 (+) True G97999
TU122221 lncRNA downstream 260593 9759572 ~ 9760688 (+) True G98025
AMCG00015437 mRNA upstream 7416 9464324 ~ 9465756 (+) True AMCG00015437
AMCG00015432 mRNA upstream 30377 9440428 ~ 9442795 (+) True AMCG00015432
AMCG00015433 mRNA upstream 37744 9415883 ~ 9435428 (+) True AMCG00015433
AMCG00015434 mRNA upstream 71792 9399430 ~ 9401380 (+) True AMCG00015434
AMCG00015427 mRNA upstream 86147 9383674 ~ 9387025 (+) True AMCG00015427
AMCG00015435 mRNA downstream 73889 9572868 ~ 9585537 (+) True AMCG00015435
AMCG00015444 mRNA downstream 122753 9621732 ~ 9624582 (+) True AMCG00015444
AMCG00015445 mRNA downstream 125610 9624589 ~ 9629786 (+) False AMCG00015445
AMCG00015443 mRNA downstream 144143 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015450 mRNA downstream 198321 9697300 ~ 9702772 (+) True AMCG00015450
TU121801 other upstream 440387 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 519497 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 519497 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 519497 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 589219 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 207118 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 258094 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 316739 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 430613 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 586449 10085428 ~ 10086512 (+) False G98093

Expression Profile