RNA id: TU122162


Basic Information

Item Value
RNA id TU122162
length 2754
lncRNA type sense_over
GC content 0.49
exon number 1
gene id AMCG00015445
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9624589 ~ 9631892 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACGAGTGCGCCGACTGTGGCCGGCGTTTTAATTACCTGGGCAACCTGCGGCAGCACCAGAGGATCCACACGGGGGAGAAGCCGTTCACCTGTGAGGAGTGCGGGGAGCGCTTCCGGCACGCCGCCCAGCTCAAGAGCCACCGCCTGAGCCACAGCGGCGCCCAGAGCCCCTTCTCCTGCCCCCAGTGCGGCAAGGGCTTCCCCGTGCTGTCCGGCCTCAAGAGGCACCAGCGCGTGCACACGGGGGAGAGCCCGTACCAGTGCGCGCAGTGCGGCCGCCGCTTCAAGGAGCTGGGCAACCTGTACACCCACCAGCGCATCCACAGCGGCGCCACCCCTTACCAGTGCGCCCAGTGCCAGCGGAGATTCAGACACCTGGGTACCTACAAGAGCCACCGCTGTGCCGCGGCCCAGAACCCGAGTCTGGTGCCCGCGGACATAGACTGACTTCCGCCCCCTACCACCGACGCAGCTCGAGTGGCTGCGGACATATTTTGGGACACTAACTGCCCCCACGATGGGCAGAGAGCTGAGAATGAGCATCGACACACGCGGATTCCACCTACACTGGTAtcgtttctgtttttttgtgtttgcgaAAGGAGCTTGTCGCAAAAAAGGGGAGTACGAATCAGACAACGGCCGTAGAAGGTCACTTGAGAAGAGTCGAGCGCAGTGGAAGTGGGTTCAAATCCACGCTAGGCCCGGGAGATAGAGGCAGAAACACTACCCTAGAACTCCCTGTTTGGAGGAAGTGAAACTCTAGGGATACAAGGCTGGGTTCGCAGACCTAGATTATCTCTGGTCATAGTTTACTAGTCTACTTGGACATCGCTTTTGTGCGTCAGTATATTTTTTCCCATTGGGGAGGGGGAAGCATTAAAAAGGCAACACTAAACATGCTACACACGAGAATAGAAGGAGGAATGTTAAGATGGGTTTAAAATTGAATAGGGAACATACTGGCTGCTTTACTCTGCTGGCAGGAGGCCGTGTGTTCATGTGCTGCTGTCACGATCTGAAATCTTAGTCGATCCAGCCCTTGGAAATAAAGGGGAGGTTCCCATGCTGTACAGCACAGAACTAATCTTTTAAAGCTTTTGAACCTTTAACGATGCCAACATTTAAACTTTCTACATCGTGTGTCACAATGTTTTACAACATCGCGTCTCTAATCCATCGGatgttattttcagaaaacttaAGTTCTTAAACATTAAACAGATCACTCTTAACCTAttacataataatgaaaacactaCATAGAGTAATTTCTGTTTGTGACAATAGCAAATCACAAGTTACAACTGTTGTTAAACCGCACATTTTACAatctaaaatgtgttaaaaatggcgcagtgatgttttttattttttaattgacagtGAACCTCCCCTTTAATAAAATCGGGGTCTGCATAACAATAACTGCATTCTACATACTGATTTTCTGACTAGTAAGTAGTGTGGTACGCAGTATGAAGATGAATGATTCAGTGTACTATATATGTCATGTGACCTCAcgtgaagcatgatgggatgcagTATTCATTGTAGCAAGCTCTGGTTGTATACGGCAATTTTGGCGAATGTAGCAAGCCATCAGGGTACTTTCACCATACGACACATTCATATACTATGTCCAATATGCATACTGCAAGCATACTACTGCAATGCTGGAATGTAGTACGTGTAGTGTGGTAGTATGTGATTTCGAATACAGCCTGCGTCACACAACACCTCACGCTATTGGCTGTGGCCCGATATTCCAGATCGCCTCGTTTTCCAGGCCTCCCTCCCACGCCCCCCCGAGAGAGGGACTGTGCTGTTACTGGACTCTGCTTGTGCTGCTGGTGTTGAGTgagatttttcattttaggaGGAACTGCAATTCTCCAGCGAATAAAGAAGCAGACAAAAGAAACGCCCTATGCTACCGGTGTCCCTCCCACATTGACTGGCCTTGCTAGGGAATACATAACAAGGTGTGAACTGCGTGTTTTCATATGGTTTGAAGATCCCCCCCCAAAAGAAACAACACCTTTTAGATGGAGAGTTCATTCTCCCAGCAAAAAACggagagatctgaaaacaaGAAACCACTCTTCCCACACACTTCACCCCCCCCCACTGATTTGATGACGATCCTTCAACGTCGGGAGAGGAGTGTGAAGTGTGTGGGAGTGGCTGTTCATGTTGTCCATGCTGTTTCGAGGGTCCCCCACAGCCAGACAGTTCGGACAGAGACGCACCGATGAGATTGCATCTGGCCTCTAAGATGTAGGTTTTGAAAACACACACGTTTCTGGcatcacaatttaaataataatcataattacagCAGCAGAAGGTCAAACACACTGAGCCAGGCCTAGAGCCGCCACAATAGGCCTGGAGTTTCAAAGATCTTCCCTGCGAAGCACAGCAAGGAAGCGTGCTCATCCTCTCTTGTGACGGTGACCTGTGTTCGTGCTGGATGCATACCTGCAGCTCACTAGGATACGGCAGGCTGTACTGACCAGGCACGGGCAATGCTGCCACCTTGTGGACCGCCTCCACCACTACCCCTGGGGGGACGGCAGAGACTGTCCCCTTGCCGAAGAGCTGGCTTTCATAAAGTTTATTCGTTTGGAAAGTGATTATAAGGTGGCAGGGTCTGGTGGTCAGCctcaattaaatgttattaattataagTGTTATAATTGCACTGGCGTAGATGGAGTTGTTTGTAAAGCTGAATTGAAATAAAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121919 lncRNA upstream 281895 9345762 ~ 9347244 (+) True G97777
TU121911 lncRNA upstream 298113 9327636 ~ 9331026 (+) True G97770
TU121863 lncRNA upstream 307455 9321042 ~ 9321684 (+) True G97730
TU121883 lncRNA upstream 390797 9237833 ~ 9238342 (+) True G97745
TU121878 lncRNA upstream 405882 9222636 ~ 9223257 (+) True G97741
TU122181 lncRNA downstream 23576 9655468 ~ 9657866 (+) True G97989
TU122191 lncRNA downstream 70944 9702836 ~ 9703109 (+) True G97998
TU122192 lncRNA downstream 73832 9705724 ~ 9706036 (+) True G97999
TU122221 lncRNA downstream 127680 9759572 ~ 9760688 (+) True G98025
TU122272 lncRNA downstream 227206 9859098 ~ 9862136 (+) False AMCG00015456
AMCG00015444 mRNA upstream 4557 9621732 ~ 9624582 (+) True AMCG00015444
AMCG00015435 mRNA upstream 43602 9572868 ~ 9585537 (+) True AMCG00015435
AMCG00015436 mRNA upstream 130160 9473172 ~ 9498979 (+) True AMCG00015436
AMCG00015437 mRNA upstream 163383 9464324 ~ 9465756 (+) True AMCG00015437
AMCG00015432 mRNA upstream 186344 9440428 ~ 9442795 (+) True AMCG00015432
AMCG00015443 mRNA downstream 11230 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015450 mRNA downstream 65408 9697300 ~ 9702772 (+) True AMCG00015450
AMCG00015461 mRNA downstream 140682 9772574 ~ 9810428 (+) True AMCG00015461
AMCG00015455 mRNA downstream 184239 9816131 ~ 9819910 (+) True AMCG00015455
AMCG00015457 mRNA downstream 193023 9824915 ~ 9842408 (+) True AMCG00015457
TU121801 other upstream 596354 9029717 ~ 9032785 (+) False AMCG00015407
TU121758 other upstream 675464 8951793 ~ 8953675 (+) True AMCG00015396
TU121759 other upstream 675464 8951793 ~ 8953675 (+) False AMCG00015396
TU121760 other upstream 675464 8951793 ~ 8953675 (+) False AMCG00015396
TU121749 other upstream 745186 8877292 ~ 8883953 (+) False AMCG00015390
TU122193 other downstream 74205 9706097 ~ 9710729 (+) True G98000
TU122222 other downstream 125181 9757073 ~ 9758430 (+) False G98025
TU122266 other downstream 183826 9815718 ~ 9872005 (+) True G98053
TU122294 other downstream 297700 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 453536 10085428 ~ 10086512 (+) False G98093

Expression Profile