RNA id: AMCG00015456


Basic Information

Item Value
RNA id AMCG00015456
length 3070
RNA type mRNA
GC content 0.62
exon number 15
gene id AMCG00015456
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9851672 ~ 9862136 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGGACAGGGGGACAATCGGGAGGCGGAGAGCCAGGCCGCGCTGGTGCTGGAGCTGCAGACTCGGCTGGAGGAGCAGAGGGGGCAGGCCCGGCAGAGGCAGCAGGAGCTGGAGGCGGAGAGAGAGCGGCTGAGGCAGACGGCGGAGGCCCTGGGCGAGGCACGGAGGAAGATGGAGGCCTTGAAAGGCGAGAGTGAGCTGGCCGGGGAGGAGCTGCGCCGGCTGCACAGTGAGGTGGAGCGGCTGCGGCTGCAAAGAACAGAGTTGGCTCAGCTGCGGGAGGAGAGGAGCCAGCTGGAGCGCGAGAGGGAGGGACTGCGCAGCTCCTTGGACTCACTGAGGGCTGCAGCACGCAAGGGAGACCAGCTGGAGCTGTCCATCCAGACACTGAAGGCGGAGTGTGAGCGGCTGGGGCGGAGCCTGGAGGCGGCGCAGCGGCGGGGGGAGGAGCTGGAGGCGGAGCTGCGGGAGGCTGCTCTGGAGGCAGGGTCCCTGGGCCAGGGGCGGGACCAGGCGGTGCTGGAGGTGCGGCGGCTGGAGCAGGAGAAGGAGGCGGTGCTCAGCCAGCTGGCCGGGCAGGAGCGGGagcagaggcagagggagagggaggtggcCCGGCTCCGGCAGCAGCTCGAGAGCACCGCCTCCGCCCTGGAGCACAGCACCCAGAGAGCCTGCAGCCTGGAGACGGACAACAGGCGTCTGCAGCAGGATGTTTGTCGGCTGCAGGAGGAGCAGGTGCAGCTGGAGGGGCTGCAGACTGAGGTCCACGAACTGAGAGCGCTAAGAACTCAGCACCAGAGCAGCCTGGCCAACCTCACacagGGGTCTCAGCCCTGCGGACGGGTCCTGACCCCCAGCCCCACTCCGACACACCAGCCCCAGGACAAGAGAGATGAAGACAGCACAGGAATGGACCTCACTGACAGGGAGCCTACTAATACTACAGGGGGACCCCAAACCCCCTCAGCCGGCCTGGACCCCCCTTCTGCACCCCCAACACAGGAGACGGTACCCCTAAGCTCCAGACCGTCACCTCAAGGGACAGGAGGCACAGATATAGCCAGACTGGTCGAGCAACCGCAAAAACCTGATAAGCTCCACCAGGATAAAATCAGGAATGCCGACGCCATAAGCTGCAGGGTACCCCAAACTCAGGAAGTGCCAGACGGCCGAGAACTCCCAACCTCTGACCTCAAGGTGACCCCTGACCTCCAAGGCACAGCGTCTACTCCCCTGAAAGTAGAGGGCACTCCTGGCATTCCTCACCCGACCTTCAACAGGGATGCGGGGCCCACCCTGACCTTTGAACCCCAGGACAGGAGGGAGCCTCTGAGCGCCCGGCTGATCGAGGTGGAGAGGAAGAATGCATCACTGCAGGCGGAGCGCGATGCCCTGGGTAACCAGCTGGCTCAGAGTCAGCAGCAGTGCGGGCGGCTGCAGGAGCAGgtGGAACGGGCGACCCTGCTCTCTCAGCATGCTGCTCTCCAGTCTCGCTGCTCGGAGGCGGGGTCTCGTGTCGCTGCCCTGGAGGCTGAGGGGCGGGGCCTAGTCAGAGAGAAGGAGGAGCTGCGTGGGCAGTGGGAGGGGCTGCGTCGAGACCACGCCCAACTCACCACCCTGCACCAGCGGCAGGAaAcccacagggagagagagagagagctggagagactACGAGAGGACAACATCAGGCTGGCCACTCAGCAGAGGGAGTCTGCGCAGGTGCAGACAGAGCTGTGTGCGCAGGCCTCGGCTCTGCGTGGGGAGCTCGGCGCCCTGCAGCTAGATAAGACCCGGTTGGAGACCGAGCTGAACTCCCTGAGAGAGCAGAACCAGAACCTGGACATCACCTCAGCCCGGCTCAGCAGCCAGTACCAGCTAAAGGGgaccctggaggaggagaaccGAGCCCTGGTGGAACAGAACCAGAGTCTGGGCCGGGAGAACCGAGCCCTGCTGGAGAGGAAGAAGCAGAAGCTGGTAGAGAAGATCATGGACCAGTACCGGGTTCTGGAGCCAAACATGCCTGTGCCAAGCAAGGCTAAGAAGGGCAACTGGATCACTGACCGGATGAAGCGGCTGATGAAGCCACGGGGCCGCGAGGGCCGGGAGCCGCTGCGCGCCCACTTCATCGCCGCCGGCAGCGTAGAGAACCTGGCCCAGGGCAaCCCCCGCAGCGCCCCCGTGTCCCCCTCCCCGCTGAGGAAGGCCACCAGCTCAGTGAGTGTGTGCGACGATCACCACGGCCCCCAGCGTGCCGGCCGCCACAAGCTCAGTTCCCGCTACCCCGTCTCCATGTCCTTCAGCCCTGGGGACGTCCGGCCCACGCCACGCCAGCGCTTCCGCCAGCGGGGGACCAGTGTGCACGGCGAGCTCCCGGCAGAGGACAGCCCCCCCAGCAGGGACAGCCTGACCTCCCTGGGTGAGGCCACAGAGGAGGAGAAAGACTGCCAATCAAGGGACCAATCACCTGTGACCAAGAAGAACAGCCTCCCATCGCACTGATGATTCCAGTCCACTGCAGCCCAGTTCAGTCCCAGACCCTGTCCACTCAGGTCAACTACTGTCCCAGTTCAGTCCACCCGACTCCACTCCACTGCAGTGCACCAGAGAGAGTGCcttactgtactgcactgtcaGAGAGAGAGCGTGTCTGCACTGTACTGGAGACAATGCCTTATATACCGTTACCACTGGCCTTGTTTAGGTGCACTTCGGCGTGGGCTGTAACCGTACACATAAACTTTGCTGCCTGCGTTTCCATTCATTGTCTTgaggtacagctgccctaggaaaTGAAAGTGAGGCACGAAAGGTCAAAATGCATTCTGGGCCACTCGTCATTTTGGGATTTAGTGTTAaaaaactggaggctgaaatacctctAACATTAAATTGTCCTGCAGGGCACTGTGCCAAAGGTCCAACCTGATTGTACTGGATTGAGTAGCATCGCATCCTGATGTCTCAGCTctaataaattatgtgtttatctccaagatggctgacctgtttattattattattattattattattattattattattatcatcatcatcatca

Function

GO: NA

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122221 lncRNA upstream 90984 9759572 ~ 9760688 (+) True G98025
TU122192 lncRNA upstream 145636 9705724 ~ 9706036 (+) True G97999
TU122191 lncRNA upstream 148563 9702836 ~ 9703109 (+) True G97998
TU122181 lncRNA upstream 193806 9655468 ~ 9657866 (+) True G97989
TU122162 lncRNA upstream 219780 9629139 ~ 9631892 (+) True AMCG00015445
TU122278 lncRNA downstream 16971 9878459 ~ 9879136 (+) True G98060
TU122320 lncRNA downstream 139726 10001214 ~ 10012888 (+) False AMCG00015475
TU122474 lncRNA downstream 335139 10196627 ~ 10197404 (+) True G98195
TU122489 lncRNA downstream 357066 10218554 ~ 10222496 (+) True AMCG00015492
TU122548 lncRNA downstream 461770 10323258 ~ 10323970 (+) True G98255
AMCG00015457 mRNA upstream 9264 9824915 ~ 9842408 (+) True AMCG00015457
AMCG00015455 mRNA upstream 31762 9816131 ~ 9819910 (+) True AMCG00015455
AMCG00015461 mRNA upstream 41244 9772574 ~ 9810428 (+) True AMCG00015461
AMCG00015450 mRNA upstream 148900 9697300 ~ 9702772 (+) True AMCG00015450
AMCG00015443 mRNA upstream 207444 9643122 ~ 9644228 (+) True AMCG00015443
AMCG00015458 mRNA downstream 2260 9863748 ~ 9868818 (+) True AMCG00015458
AMCG00015459 mRNA downstream 7654 9869142 ~ 9872454 (+) True AMCG00015459
AMCG00015467 mRNA downstream 49791 9911279 ~ 9915357 (+) True AMCG00015467
AMCG00015465 mRNA downstream 59498 9920986 ~ 9925429 (+) True AMCG00015465
AMCG00015464 mRNA downstream 68127 9929615 ~ 9930846 (+) True AMCG00015464
TU122222 other upstream 93242 9757073 ~ 9758430 (+) False G98025
TU122193 other upstream 140943 9706097 ~ 9710729 (+) True G98000
TU121801 other upstream 818887 9029717 ~ 9032785 (+) False AMCG00015407
TU121759 other upstream 897997 8951793 ~ 8953675 (+) False AMCG00015396
TU122294 other downstream 68104 9929592 ~ 9930804 (+) False AMCG00015464
TU122332 other downstream 223940 10085428 ~ 10086512 (+) False G98093
TU122336 other downstream 223940 10085428 ~ 10086512 (+) True G98093
TU122488 other downstream 351513 10213001 ~ 10217201 (+) False AMCG00015492
TU122544 other downstream 455420 10316908 ~ 10317325 (+) True G98251

Expression Profile